Pairwise Alignments

Query, 256 a.a., exonuclease IX (RefSeq) from Shewanella loihica PV-4

Subject, 963 a.a., DNA polymerase I from Caulobacter crescentus NA1000

 Score =  119 bits (299), Expect = 2e-31
 Identities = 86/251 (34%), Positives = 121/251 (48%), Gaps = 14/251 (5%)

Query: 3   RFLIIDG-LNLVRRIHAAQPNENDVNGLPERVTSACRKLLSK-------HNPSHVTLVWD 54
           R  ++DG   L R  HA  P     +GLP         +L K         P+H+ ++WD
Sbjct: 23  RLFLVDGSAYLFRAYHALPPLTRKSDGLPVGAVQGFCNMLWKLLRDMQGDTPTHLAVIWD 82

Query: 55  GDAISWRKKLYDDYKKGRKPMPEALSQALPALKQHLAERGFHSIDAIA-EADDVIATLAS 113
               ++R  LYD YK  R P PE L    P +++     G  +I+    EADD+IA  A 
Sbjct: 83  HSEKTFRNALYDQYKAHRPPPPEDLIPQFPLVREATLAFGVPAIELPGYEADDLIAAYAC 142

Query: 114 KMVQAKGEAIIVSTDKGFTQLLSPQIQLWDHFNQQAITIEDRERQLGVDRSQFIDFLAMA 173
           K     GEAIIVS+DK   QL+   + ++D      I  E    + GV   + +D  A+ 
Sbjct: 143 KARDIGGEAIIVSSDKDLMQLVGDGVSMYDPMKGVRIEREQVFEKFGVYPEKVVDVQALC 202

Query: 174 GDSGNKIPGIPGIGPKSACELLKTFRTLANVYASLDKIGAKQAKKLEEGRALA---RLSY 230
           GDS + +PG PGIG K+A +L+  +  L  + A   +I  KQ K+ E     A   RLS 
Sbjct: 203 GDSVDNVPGAPGIGIKTAAQLITEYGDLDTLLARAGEI--KQPKRRETLINFADQIRLSR 260

Query: 231 KLVQLQTDIPL 241
            LV+L  D PL
Sbjct: 261 ALVKLDCDTPL 271