Pairwise Alignments

Query, 450 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

Subject, 451 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  729 bits (1882), Expect = 0.0
 Identities = 348/449 (77%), Positives = 405/449 (90%), Gaps = 1/449 (0%)

Query: 1   MIVNISPRGSMDQLSQLEVDRLKQNASSELYQLFRSCSLAVLASGLKSDNACTLFEQYSN 60
           MIV +SP+GSMDQLSQLEVDRLK++A S LYQL+R+CSLAVLA+GLK+DN+  LFEQYS+
Sbjct: 1   MIVKVSPKGSMDQLSQLEVDRLKKSAQSALYQLYRNCSLAVLAAGLKTDNSKALFEQYSD 60

Query: 61  FNINVLRRERGIKIELVNPPEAAFVDGNIIAGIQEHLFAVLRDIVYLSDRYDNLKHINLT 120
           F+I+VL+RERG+K+EL+NPPE AFVDG II GIQEHLF+VLRDI+Y+SD+YD LKHINLT
Sbjct: 61  FDIHVLQRERGVKLELINPPEQAFVDGQIITGIQEHLFSVLRDILYISDKYDTLKHINLT 120

Query: 121 NSSHITNVVFDILRNAQVI-PRQDPNLVVCWGGHSIDENEYQYTREVGYELGLRSMDICT 179
           N+SHITNVVFDILRNA+ I P +DPN+VVCWGGHSI+  EYQYTREVGY+LGLR +DICT
Sbjct: 121 NASHITNVVFDILRNARAIAPMKDPNVVVCWGGHSINAIEYQYTREVGYQLGLRELDICT 180

Query: 180 GCGPGAMEGPMKGAAIGHAKQRVRTARYVGLTEPSIIAAEPPNQIVNELVILPDIEKRLE 239
           GCGPGAMEGPMKGAAIGH+KQR++ ARY+GLTEPSIIAAEPPNQIVNELVILPDIEKRLE
Sbjct: 181 GCGPGAMEGPMKGAAIGHSKQRIKNARYIGLTEPSIIAAEPPNQIVNELVILPDIEKRLE 240

Query: 240 AFVRLGHGIVIFPGGAGTAEELLYLLGILLNKENANIPFPLVLTGPRESADYFTKIDEFV 299
           AFVRLGHGI+IFPGGAGTAEELLY+LGILLNKEN   PFPLVLTGP ESADYF KIDEF+
Sbjct: 241 AFVRLGHGIIIFPGGAGTAEELLYILGILLNKENQETPFPLVLTGPSESADYFIKIDEFI 300

Query: 300 AATLGEEAQSKYEIVIDDPVRVARIMSHGMTVIKQHRRDTGDSYQYNWSLKIEPEFQLPF 359
           AATLG EAQ KY+I+ID+P  VAR+M  GM  +K HRR TGD+YQY W LKIEPEFQLPF
Sbjct: 301 AATLGPEAQQKYQIIIDNPAEVARVMKQGMEQVKNHRRTTGDAYQYQWGLKIEPEFQLPF 360

Query: 360 VPDHEIMSNLNLYYQPNKADLAANLRRAFSGIVAGNVKMDTMREIERSGPFELRGDKQLM 419
           +P H++M+NLNL++Q NKA+LAANLR+AFSGIVAGNVK +T+++IE+ GPF ++GD  LM
Sbjct: 361 IPTHDVMANLNLHFQSNKAELAANLRKAFSGIVAGNVKSETIKQIEQLGPFHIKGDPHLM 420

Query: 420 KLMDTLLQAFVDQQRMKLPGSAYVPCYRI 448
           +LMD LL AFV Q RMKLPGSAYVPCY+I
Sbjct: 421 ELMDNLLGAFVAQHRMKLPGSAYVPCYQI 449