Pairwise Alignments

Query, 803 a.a., TonB-dependent receptor (RefSeq) from Shewanella loihica PV-4

Subject, 966 a.a., hypothetical protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  102 bits (254), Expect = 1e-25
 Identities = 78/247 (31%), Positives = 116/247 (46%), Gaps = 22/247 (8%)

Query: 3   LAVSALAVSSALILPGVHAEDQQATLDQQASFEKIEIIGSRIALRTATDSVAPVDIITAE 62
           L++S  A     +   +HA+   A  D   + + + + GSR+  R  T++  PV  ++ E
Sbjct: 24  LSLSVAAALGLTVGADLHAQQTPAAGDATQTLDSVVVTGSRLR-RVDTETANPVVTVSQE 82

Query: 63  QLESTGMTETAKALQ---FAAPSYSFPFSSVTDGSDAVRPASLRGLSPDHTLVLVNGKRR 119
           Q+ +TG       LQ     A + + P+++   G+ A    SLRGL    TLVLVNG R 
Sbjct: 83  QIAATGKATVGDLLQELPSIAGNATNPYTNNGGGTGA-SAVSLRGLGDKRTLVLVNGIRL 141

Query: 120 HGSALVHLSGTVGKGSSNVDLNAIPMTAIKRIEILRDGASAQYGSDAIAGVINVVLKDNE 179
             +                D+NAIP + I+RIE+L DGASA YGSDAI GV+N +L+   
Sbjct: 142 AYN----------------DVNAIPASMIERIEVLSDGASAVYGSDAIGGVVNFILRTRF 185

Query: 180 QGGSLSAQAGQTYAGDGEQWRLGANHGIALGDDGFVNVSLEAHHKDSTNRAGLDPRQQYP 239
            G   S+  G +   DG +       G    + G +   L  H+ D  + A  D  +   
Sbjct: 186 DGVQFSSDFGTSKERDGNRRNFALTAGKTF-ERGSLIAGLSYHNIDPVSAAARDYSKDAL 244

Query: 240 QLADGSP 246
            L DG P
Sbjct: 245 ALTDGVP 251



 Score = 71.2 bits (173), Expect = 3e-16
 Identities = 71/286 (24%), Positives = 124/286 (43%), Gaps = 32/286 (11%)

Query: 478 RYENYSDFGDNTSWKLAGRYDFTDNLALRGTINTGFRAPSVQQLY---FSNISTLFNP-- 532
           R+ +YS  G  T+ K++  Y   +NL LRGT++  FRAP++ +LY     + +T+ +P  
Sbjct: 607 RFSDYSSVGSKTNSKVSLEYRPIENLLLRGTVSQVFRAPNINELYAGVAGDAATVNDPCN 666

Query: 533 -----DPVTGQLVPTESG---TFNTLSPVTKGLGI--NELEPELSQSFSLGLVYRND--A 580
                  V    VPT+     +   +S    G  +   +L+PE  +S+ +GLVY      
Sbjct: 667 GYTGGSSVACANVPTDGSYQQSDGQVSGKVSGAAVAGYQLKPETGKSYDVGLVYDPQWID 726

Query: 581 GLALTLDAYQISIDDRIILSSSVTPDDS----------PAVAEALAGTNAESARFFINAV 630
           GL+L+ D ++I ++D I   S+ T  +           P +     GT    A   +N  
Sbjct: 727 GLSLSADWWRIDLEDTITTVSAQTVLNQCYANSASAFCPLIHRNGNGTINYIAEPTVNLG 786

Query: 631 DTRTRGVDLVISQDFDIGAWGDLQANLAYAY-NKTEIQDIHFPQVLDGVGKELFDRIEQT 689
               +G+D  ++      AWG++   L   Y  + ++     P   D     + +    T
Sbjct: 787 KLWAKGIDFNLTYRLPETAWGNVNVGLNGTYLTRYDV----LPDTTDPSSVTIHNVGRYT 842

Query: 690 RMTAATPNNTGNLGLTHRLGDFKTNVRLSYFGDYTVGYSSGDVTYS 735
           +     P   G   ++  LGD+    R+ Y G+  +G S  D + S
Sbjct: 843 QAYGNFPRWRGLGTVSWALGDWSATWRIRYVGNTAIGNSDPDQSLS 888