Pairwise Alignments

Query, 803 a.a., TonB-dependent receptor (RefSeq) from Shewanella loihica PV-4

Subject, 996 a.a., hypothetical protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  114 bits (285), Expect = 3e-29
 Identities = 118/421 (28%), Positives = 185/421 (43%), Gaps = 45/421 (10%)

Query: 2   RLAVSALAVSSALILPGVHA--EDQQATLDQQASFEKIEIIGSRIALRTATDSVAPVDII 59
           RL+ + LAV   L+ P  HA  + +          +K+ + GSRIA RT   + +PV  I
Sbjct: 13  RLSAALLAV---LVAPAGHALAQSENGVAPDTTDLDKVTVTGSRIA-RTGFVTPSPVTAI 68

Query: 60  TAEQLESTGMT---ETAKALQFAAPSYSFPFSSVTDGSDAVRPASLRGLSPDHTLVLVNG 116
           TAE++ +TG T   +    +   APSY+   S+   G+  +    LRG+  D TLVLVNG
Sbjct: 69  TAEEIRATGATTISDLMARMPALAPSYTLGNSTRFIGTAGLGLLDLRGMGVDRTLVLVNG 128

Query: 117 KRRHGSALVHLSGTVGKGSSNVDLNAIPMTAIKRIEILRDGASAQYGSDAIAGVINVVLK 176
           +R  GS+          GS+ VD+N IP+  ++R+E++  GASA YG+DA+AGV+N +LK
Sbjct: 129 RRHVGSS---------PGSTAVDVNTIPVEWVERVEVITGGASAVYGADAVAGVVNFILK 179

Query: 177 DNEQGGSLSAQAGQTYAGDGEQWRLGANHGIA---LGDDGFVNVSLEAHHKDSTNRAGLD 233
            +  G    AQ G   A +G   R  A+        G  G + VS E   +D   R    
Sbjct: 180 KSFTGFETRAQTG--LADEGNYNRSFASFSAGTDFAGGRGNIAVSGEYSKQDRFGRGNRA 237

Query: 234 PRQQY-PQLADGSPDPREATFNRK----------SHQVGDAEYDNLGLFINAAKAISDNG 282
             ++Y   + + + DP      R           +H        NLG F     A   N 
Sbjct: 238 IGREYLVTVPNPAYDPTRPPSERNPQNVLSGPGGNHSTSYGGTFNLGTFDFRNPASYGNR 297

Query: 283 ELYAFGGVSKRETKSGAFYRRA-------LDKRNLTEVYPDGFLPQINPEIIDTSLVLGY 335
            L+   G  +R    G              D   + ++ P GF  +    +++  L   +
Sbjct: 298 YLFNEDGTFRRNRYDGTVVSNTSCVDCDFADLNAVADLQP-GFDRKSVNTMVNFELSENH 356

Query: 336 E-FTLGEWNIDTSAGHGENSFNYNI-VNSLNASMGPDSPTEFDA-GTLSTRETNLNIDAS 392
             F  G+++   S   G+ +F+ ++ V   N  + P+     D+ G         N+DA 
Sbjct: 357 RLFFEGKYSETDSEFFGQPAFDSSLRVRRQNPYVSPELGALMDSRGATQILMNRFNVDAG 416

Query: 393 R 393
           R
Sbjct: 417 R 417



 Score = 52.4 bits (124), Expect = 1e-10
 Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 28/147 (19%)

Query: 478 RYENYSDFGDNTSWKLAGRYDFTDNLALRGTINTGFRAPSVQQLYFS---NISTLFNP-- 532
           RY +YS  G   +W +   +    +L LRGT+    RAPS+ +LY S   N +T+ +P  
Sbjct: 627 RYSDYSSIGSTKTWNIGLDWTIIPSLRLRGTLAQAVRAPSIGELYDSQSENFATINDPCN 686

Query: 533 -------DPVTGQLVPTESG-------------TFNTLSPVTKGLGINELEPELSQSFSL 572
                   P T   V                  T+    P   G G  EL+PE ++S S 
Sbjct: 687 YLSSNSNRPGTAGDVALRQANCSALGVPVGWIDTYTANRPGVSG-GNPELKPERARSLSY 745

Query: 573 GLVYRND--AGLALTLDAYQISIDDRI 597
           GLV++ +   G  +++D ++I + D I
Sbjct: 746 GLVWQPEFFEGFGMSVDYWRIDLQDAI 772