Pairwise Alignments

Query, 803 a.a., TonB-dependent receptor (RefSeq) from Shewanella loihica PV-4

Subject, 962 a.a., hypothetical protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  103 bits (258), Expect = 3e-26
 Identities = 70/202 (34%), Positives = 104/202 (51%), Gaps = 17/202 (8%)

Query: 1   MRLAVSALAVSSALILPGVHAEDQQATLDQQASFEKIEIIGSRIALRTATDSVAPVDIIT 60
           +RL +    ++ AL  P   A  Q+ +     + ++IEI GSRI      ++  PV  +T
Sbjct: 8   VRLGLLPAGIAIALT-PAFAANAQEQSAPSTTTLDRIEITGSRIR-SVDVETAQPVFTVT 65

Query: 61  AEQLESTGMTETAKALQ----FAAPSYSFPFSSVTDGSDAVRPASLRGLSPDHTLVLVNG 116
            + ++ +G+      LQ        +YS      +D     +  +L  L  + TLVLVNG
Sbjct: 66  QQDIQKSGLVSVGDILQNLSIAGTQTYSKAAVLTSDPEQGGQYVNLYNLGENRTLVLVNG 125

Query: 117 KRRHGSALVHLSGTVGKGSSNVDLNAIPMTAIKRIEILRDGASAQYGSDAIAGVINVVLK 176
           KR   S    LSG         D++ IP + I+RIE+L+DGASA YGSDA+AGV+N++L+
Sbjct: 126 KRWTSS----LSGLT-------DMSTIPSSLIERIEVLKDGASAIYGSDAVAGVVNIILR 174

Query: 177 DNEQGGSLSAQAGQTYAGDGEQ 198
            N  G   SA  GQ   GDG +
Sbjct: 175 QNYDGAEASAYFGQNGRGDGSK 196



 Score = 72.4 bits (176), Expect = 1e-16
 Identities = 93/360 (25%), Positives = 137/360 (38%), Gaps = 84/360 (23%)

Query: 476 ALRYENYSDFGDNTSWKLAGRYDFTDNLALRGTINTGFRAPSVQQLY---FSNISTLFNP 532
           A RY NYS FGD T+ K +  +   D+L +RGT  TGFRAP++   +        T  +P
Sbjct: 586 AARYSNYSRFGDTTNSKFSFTWKPIDDLLVRGTYGTGFRAPTLSDTFGGGSQTFDTFTDP 645

Query: 533 DPVT--------------GQLVPTESGTFNTL------------SPVTKGLGINELEPEL 566
              T              G+ +P      +T             +P   G+G  ELEPE 
Sbjct: 646 CDATFGSLGNAGVAARCAGEGLPAGFRQTDTAGNAVTRRDVQGNAPFNSGVGNAELEPEY 705

Query: 567 SQSFSLGLVYRND--AGLALTLDAYQISIDDRIILSSSVTPDD--------------SPA 610
           S + ++G+VY      GL  +LD Y+ISI + I   +S+T +D              +  
Sbjct: 706 SITRTVGMVYSPHWVQGLDFSLDWYRISISNII---TSLTANDVLNNCYLNSLASYCADY 762

Query: 611 VAEALAGTNAESARFFINAVDTRTRGVDLVISQDFDIGAWGDLQANLAYAYNKT-EIQDI 669
             +A+ G     +R  +N     T G +  +       A+G    NL   Y  T + Q  
Sbjct: 763 GRDAVTGQVTTLSRGNVNLGRLETEGYNFGVRYRMPETAYGKFAVNLDTNYLATYKSQAE 822

Query: 670 HFPQVLDGVGKELFDRIEQTRMTAATPNNTGNLGLTHRLGDFKTNVRLSYFG-------D 722
              +  +  G   F R+  T            LGL   LG    N  L Y+G       D
Sbjct: 823 AGAEWANAAGYWNFPRVRAT------------LGLDWSLGALSANWNLRYYGGFRDYCWD 870

Query: 723 YTVGYSSGDVTY---SDQW-------------VMDMSVQYAATEALSFTAGAQNLFDVYP 766
              G    D  Y   +  W               D+SV + A    S T GA+N+++  P
Sbjct: 871 AAAGIECNDPNYQTPNPGWGGGTGSNKKGSISYQDVSVTWQAPWDGSVTVGARNIWNKQP 930