Pairwise Alignments

Query, 405 a.a., Na(+)-translocating NADH-quinone reductase subunit F (RefSeq) from Shewanella loihica PV-4

Subject, 340 a.a., NADH oxidase from Burkholderia phytofirmans PsJN

 Score = 96.7 bits (239), Expect = 9e-25
 Identities = 85/383 (22%), Positives = 158/383 (41%), Gaps = 68/383 (17%)

Query: 33  DVSIRINDDDDKSITTAAGDKLLGALASKNIFIPSACGGGGTCGQCRVKVKSGGGDILPT 92
           ++++   D   + +T  AG+K+L A     I +P  C  G  CG C+ + +SG  D+   
Sbjct: 5   NIALNFEDGVTRFVTCKAGEKVLDAAFRAKINLPMDCSDG-VCGTCKCRAESGSYDLGDD 63

Query: 93  E-RDHINKKEAKEGCRLACQVAVKTDMELELEEEIFGVKKWQCEV------ISNDNQATF 145
              D +++ E + G  L CQ+  ++D  + +       K  Q +       +   N A  
Sbjct: 64  YIEDALSEDEKESGLVLTCQMVPESDCVIAVPASSTACKTEQSKFAATVTKVEAHNDAAI 123

Query: 146 IKELLLKLPEGEDVKFKAGGYIQIEAPAHEVKYSDFDIPTEYRDDWEKYGLFDLVSTVEE 205
           + EL +   E     F  G Y+ I+ P                                 
Sbjct: 124 VLELDV---EAAAPVFLPGQYVNIDVPGSGQH---------------------------- 152

Query: 206 DVLRAYSMANYPDEKGVIMLNVRIATPPSEGLPPGKMSSYIFNLKAGDKVTISGPFGEFF 265
              R+YS ++ P E  +  L  +I+         G MS+++ + +AG+KV ++GP G F+
Sbjct: 153 ---RSYSFSSAPGESKISFLIKKISG--------GVMSTWLESAQAGNKVELTGPLGSFY 201

Query: 266 VKETDAEMVFIGGGAGMAPMRSHIFNQLKGEQTKRKMTFWYGARSRREIFYQEEFDALAA 325
           ++  +  ++F+ GG G+AP  S +   L    +++K+   YG     ++   +  +A  A
Sbjct: 202 LRAVERPLLFLAGGTGLAPFLS-MLEVLARTNSQQKVHLIYGVTRDLDLVQVDAIEAYVA 260

Query: 326 ENDNFEWHVALSDPLPEDNWDGYTGFIHNVLYENYLKNHKAPE-----DCEFYMCGPPIM 380
           +  NF +   ++D          T   H    + ++  H   E     D + Y+CGPP M
Sbjct: 261 KLPNFTYSTVVAD----------TESTHP--RKGWVTQHMPAEAVNDGDVDVYLCGPPPM 308

Query: 381 NSSVINMLESLGVEQENILLDDF 403
             +V    +  GV+  +   + F
Sbjct: 309 VDAVRKHFDDNGVKPNSFHYEKF 331