Pairwise Alignments

Query, 1157 a.a., DNA polymerase III subunit alpha (RefSeq) from Shewanella loihica PV-4

Subject, 1160 a.a., DNA polymerase III subunit alpha from Azospirillum brasilense Sp245

 Score =  793 bits (2048), Expect = 0.0
 Identities = 483/1120 (43%), Positives = 676/1120 (60%), Gaps = 63/1120 (5%)

Query: 1    MSEPRFVHLRVHSDFSMSDGLAKVKPILAKASEDQMAALALTDNTNLCGLVKFYGGCHGA 60
            M    F+HLRVHS +S+S+G  KVK ++    + +M A+A+TD  NL G ++F      +
Sbjct: 1    MPHADFIHLRVHSAYSLSEGAIKVKELVKLCQKKEMPAVAVTDTGNLFGALEFALAAADS 60

Query: 61   GIKPIVGCDFFML-------VPGFEDEFCS----LTVLAMNNEGYKNLTLLISDAYLRGH 109
            G++PI+G    +         PG   +  S    L +L   +EGY+NL  L+S A+L   
Sbjct: 61   GVQPIIGTVLGITRVGPANGKPGLPGKAASVPDQLVLLCQTDEGYRNLMKLVSRAFLESD 120

Query: 110  VKDRAVIDQAWLERYSEGLILLSGAKDGDVGKALLKGNQGQVDSLVAFYQTHFPDRYYLE 169
                  I    LE +S GLI L+G   G VG+ L +G +     ++   +  FP R Y+E
Sbjct: 121  PMAGPQIPLDALEGHSAGLIALTGGPAGSVGRLLGEGQKDLALDVLERLKRLFPGRLYIE 180

Query: 170  LIRTGRPDEERYLHMAVE-----LAGEKDLPVVATNQVVFIQPEQFEAHEIRVAISDGFT 224
            L R    D    +  A+E     LA   DLP+VATN   F   + +EAH+  + I++G  
Sbjct: 181  LQR--HRDHFAVIEDAIEPALIDLAYAHDLPLVATNDCYFATEDMYEAHDALLCIAEGAY 238

Query: 225  LADPRRPRRYSEQQYFRIQDEMCELFDDIPEALQNSVEIAKRCNVTVRLGEYFLPNFPT- 283
            ++   R RR +    F+  +EM ELF D+PEA+ N+V IAKRC+  ++  +  LP FP  
Sbjct: 239  ISQTER-RRLTPDHRFKSAEEMRELFKDLPEAVDNTVAIAKRCSFLLKPIKPILPPFPCE 297

Query: 284  GDLSIEDFLVEVSKKGLEERLEFLF--PDEA--QRAERRGEYDERLDVELTVINNMGFPG 339
            G     + L   S++GLE RL  +   PD    QRAE R  Y ERL+ EL VI +M FPG
Sbjct: 298  GGRDEGEELRAQSREGLEMRLNSVVYTPDMTPEQRAETRKTYFERLEFELDVIVSMKFPG 357

Query: 340  YFLIVMEFIQWGKDNGIPIGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSM 399
            YFLIV +FI+W K + IP+GPGRGSGAGS+VA+AL ITDLDPL F LLFERFLNPERVSM
Sbjct: 358  YFLIVSDFIKWAKSHDIPVGPGRGSGAGSVVAWALTITDLDPLRFGLLFERFLNPERVSM 417

Query: 400  PDFDVDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRI 459
            PDFDVDFC DRR+EVI +V + YG D V+QIITFG + A+AV+RDVGRVL  PYG VD+I
Sbjct: 418  PDFDVDFCQDRREEVIRYVQDKYGYDRVAQIITFGKLQARAVLRDVGRVLQMPYGQVDKI 477

Query: 460  SKMIPAEPG--MTLAKAFEAEPALPEAYDADEEVKDLIDMCRVLEGVTRNAGKHAGGVVI 517
             K++P  P   +TL +A ++E  L +A D+DE V  L+++   LEG+ R+A  HA GVVI
Sbjct: 478  CKLVPNNPANPVTLQQALDSEEMLRQARDSDETVARLVNIALKLEGLYRHASTHAAGVVI 537

Query: 518  APTVITDFAPLYCDAEGHNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPHLA 577
                + D  PLY D     PVTQF+   VE AGLVKFDFLGL+TLT++  A+ +I     
Sbjct: 538  GDRPLHDLVPLYRDPRSDMPVTQFNMKFVEQAGLVKFDFLGLKTLTVLKTAVDLI----- 592

Query: 578  KQGKEPVRIEAIVLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVAL 637
                E   +  + LDDP S+ +L R E+T VFQLES GM+D+++RL+P+  ED+IALV+L
Sbjct: 593  ---PEKPDLTTVTLDDPRSYEILGRAESTGVFQLESSGMRDVLRRLKPNRLEDIIALVSL 649

Query: 638  FRPGPLQSGMVDNFIERKHGREEVSYPDQQWQHESLKPILEPTYGIILYQEQVMQIAQVL 697
            +RPGP+ +  +  +I+ K+G E    PD  + + +L+PIL+ T+GI++YQEQVMQIAQVL
Sbjct: 650  YRPGPMDN--IPKYIKVKNGEE---LPD--YMNPALEPILKETFGIMIYQEQVMQIAQVL 702

Query: 698  AGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAVKNGVDGELAMKIFDLVEKFAGYGFN 757
            +GY+LGGAD+LRRAMGKK  EEM K+R  F  GA   GVD + A  IFD V KFAGYGFN
Sbjct: 703  SGYSLGGADLLRRAMGKKIKEEMDKERDKFVVGAKDKGVDPDQASMIFDQVAKFAGYGFN 762

Query: 758  KSHSAAYALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLLPPDVN 817
            KSH+AAYALV+Y T +LK + P +FMAA M+ D+ NTDK+     E  R+ + LL PD+N
Sbjct: 763  KSHAAAYALVAYHTAYLKANHPVEFMAASMTLDLGNTDKLNVFRQELVRLKIKLLTPDIN 822

Query: 818  KGLFRFTV----DDDLNIVYGIGAIKGVGEGPVESIL-KAREDGPFIDLFDFCARVDLKK 872
            K    F V    D    + Y + A+KGVG   +++++ + R++GP+  LFDF  R+DLK 
Sbjct: 823  KSDSIFGVEALPDGTKAVRYALAAVKGVGLPAMKAVVEERRKNGPYKSLFDFARRLDLKT 882

Query: 873  LNRRVIEKLICAGALDNLGPHRAAMMATLPEAIRAADQHAKAEAIGQHDMFGLLN---SE 929
            +N+R +E L CAGA D + P+RA + A L   IR A   A     G  ++FG       E
Sbjct: 883  INKRQLENLTCAGAFDGINPNRAQVHAALETLIRYAQAEAAERDSGIGNLFGGAGGGLKE 942

Query: 930  PEDNKQQFVHCTPWPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHP--TE 987
            P+  K +      W     L+ E   +G YL+ HP++ +   L      R  D+    T 
Sbjct: 943  PDLPKVK-----EWEPLEKLKHEFGAIGFYLSAHPLDAFAGPLGRMRVVRSADLATAVTG 997

Query: 988  RGKTTKA-AGLVVATRVMMTKRGSKMGLVTLDDKSARLEVMLFTEAFEKFGELLEKDR-- 1044
             G T ++ AG+VV+ +    K G++   V L D S   EV +F+E      +LLE  R  
Sbjct: 998  GGSTRRSVAGIVVSRKEKTAKSGNRFAFVELSDSSGGYEVTVFSEVLATNRDLLEAGRPV 1057

Query: 1045 ILIVEGEVSFDDFSGGNRMTARSIIDMGEARSHFAHAVEV 1084
            ++ V+ +++ +D     R+T + +  + +A +  +  ++V
Sbjct: 1058 LMTVDVQMNGEDI----RLTCQEVKPLEDAVAQVSDGLKV 1093