Pairwise Alignments

Query, 1157 a.a., DNA polymerase III subunit alpha (RefSeq) from Shewanella loihica PV-4

Subject, 1196 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Xanthomonas campestris pv. campestris strain 8004

 Score = 1003 bits (2594), Expect = 0.0
 Identities = 545/1131 (48%), Positives = 731/1131 (64%), Gaps = 57/1131 (5%)

Query: 1    MSEPRFVHLRVHSDFSMSDGLAKV--KP------------ILAKASEDQMAALALTDNTN 46
            MS  RFVHL VH++FS++D   +V  KP            +L++A E  + ALA+TD  N
Sbjct: 1    MSTSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNN 60

Query: 47   LCGLVKFYGGCHGAGIKPIVGCDFFMLVPGFEDEFCSLTVLAMNNEGYKNLTLLISDAYL 106
            L  LVKFY    G GIKPI G D  +  P        +T+L  + EGY +L+ L++ A++
Sbjct: 61   LFALVKFYKAAEGVGIKPIAGADVMIATPDVTP--WRMTLLCRDREGYLSLSRLLTRAWM 118

Query: 107  RGHVKDRAV-IDQAWLERYSEGLILLSGAKDGDVGKALLKGNQGQVDSLVAFYQTHFPDR 165
             GH  +  V I   WL+     L  L+G +D   G+   +G     +  +A +Q  F D 
Sbjct: 119  EGHRPEGGVAIHPEWLQAGHANLFALAG-RDSLAGRLFAEGRADLAEQQLADWQRVFGDG 177

Query: 166  YYLELIRTGRPDEERYLHMAVELAGEKDLPVVATNQVVFIQPEQFEAHEIRVAISDGFTL 225
             +LEL RTGR  EER+   A+  AG + LPVVA+N V F+    F AHE RV IS G  L
Sbjct: 178  LHLELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFAAHEARVCISSGRVL 237

Query: 226  ADPRRPRRYSEQQYFRIQDEMCELFDDIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTG- 284
             DP+RPR YS+QQY +  +EM  LF D+P+A+ N++ +A+RCN+ +RLG YFLP +P   
Sbjct: 238  DDPKRPRDYSDQQYLKSSEEMAALFADVPDAIDNTLALAQRCNIEMRLGTYFLPAYPVPE 297

Query: 285  DLSIEDFLVEVSKKGLEERLEFLFPDEAQRAERRGEYDERLDVELTVINNMGFPGYFLIV 344
            D +++ ++   S+ GL  RLE    +     + R +Y +RL+ EL  I  MGFPGYFLIV
Sbjct: 298  DETLDSWIRSQSRDGLAARLE---KNPIAPGKTRQDYVDRLEFELDTIIKMGFPGYFLIV 354

Query: 345  MEFIQWGKDNGIPIGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDV 404
             +FIQWGK+ GIPIGPGRGSGAGSLVA+AL+ITDLDPL ++LLFERFLNPERVSMPDFD+
Sbjct: 355  ADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDI 414

Query: 405  DFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKMIP 464
            DFCMDRRDEVID+VA  YGR+ VSQIIT+GTMAAKAVVRD GRVLG  YG VD ++K+IP
Sbjct: 415  DFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLVDSVAKLIP 474

Query: 465  AEPGMTLAKAF-------EAEPALPEAYDADEEVKDLIDMCRVLEGVTRNAGKHAGGVVI 517
               G+TL  A         A P L + Y  +++V+DL+D+ R LE +TRNAGKHAGGVVI
Sbjct: 475  NILGITLKDAMGEGKDTEMASPELIQRYQVEDDVRDLMDLARQLEDLTRNAGKHAGGVVI 534

Query: 518  APTVITDFAPLYCD----AEGHNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMIN 573
            AP  +++F PL+ +      G NPVTQFDKNDVE  GLVKFDFLGLRTLTIIDWA++ IN
Sbjct: 535  APEPLSEFCPLFAEHDEGGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDWAVKAIN 594

Query: 574  PHLAKQGKEPVRIEAIVLDDPASFR-LLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMI 632
               A+ G +PV I AI LDD  +++ +     T AVFQ ES GM+ L+K  +PD FED+I
Sbjct: 595  VRHARAGIDPVDITAIPLDDAPTYKGVFASGNTGAVFQFESSGMRRLLKDARPDRFEDLI 654

Query: 633  ALVALFRPGPLQSGMVDNFIERKHGREEVSYPDQQWQHESLKPILEPTYGIILYQEQVMQ 692
            ALV+L+RPGP+   ++ +F  RKHG++++ YPD +      + IL+ TYGI++YQEQVMQ
Sbjct: 655  ALVSLYRPGPMD--LIPDFNARKHGQQDIIYPDPR-----TEAILKDTYGIMVYQEQVMQ 707

Query: 693  IAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAVKNGVDGELAMKIFDLVEKFA 752
            +AQ++  Y+LGGAD+LRRAMGKK P EMAK R +F EGA K GV  + A +IFDL+EKFA
Sbjct: 708  MAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAQKADEIFDLMEKFA 767

Query: 753  GYGFNKSHSAAYALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLL 812
            GYGFNKSH+AAYALVSYQT WLK H+PA+FMAA +S+DMDNTDK+V  +DE   +GL +L
Sbjct: 768  GYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLGLTVL 827

Query: 813  PPDVNKGLFRFTVDDDLNIVYGIGAIKGVGEGPVESILKAR-EDGPFIDLFDFCARVDLK 871
            PP VN+  + F       I YG+GAIKGVG+G  E+I++ R  +GP+  L DFC RV   
Sbjct: 828  PPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERLRNGPYTTLLDFCTRVGTA 887

Query: 872  KLNRRVIEKLICAGALDNLGPHRAAMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPE 931
            KLNRR +E +I AGA+D LG +RA++M  LPE ++A +Q A+  A GQ+ +FG  +    
Sbjct: 888  KLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPDPSAP 947

Query: 932  DNKQQFVHCTPWPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHP------ 985
              +        WP    L GER+TLG YL+GHP + +  E++      L  +        
Sbjct: 948  AMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVRELVGCDLSALDKILASQQ 1007

Query: 986  ---------TERGKTTKAAGLVVATRVMMTKRGSKMGLVTLDDKSARLEVMLFTEAFEKF 1036
                      +R    + + ++    V + ++G     V L+D   R+E   F++A  +F
Sbjct: 1008 RGGGGGGDGEKRAWRPEVSAILAGQVVGVRRKGDSQVFVQLEDGRGRVECSAFSDAMAEF 1067

Query: 1037 GELLEKDRILIVEGEVSFDDFSGGNRMTARSIIDMGEARSHFAHAVEVDLD 1087
            G LL +DRILI++G +  D+F+GG  +  R   D  +  +     + + LD
Sbjct: 1068 GHLLTRDRILIIKGGLREDEFNGGYSLRIRQCWDYEQICADHTQRLSLRLD 1118