Pairwise Alignments

Query, 1157 a.a., DNA polymerase III subunit alpha (RefSeq) from Shewanella loihica PV-4

Subject, 1169 a.a., DNA polymerase III subunit alpha from Sinorhizobium meliloti 1021

 Score =  799 bits (2064), Expect = 0.0
 Identities = 478/1180 (40%), Positives = 676/1180 (57%), Gaps = 54/1180 (4%)

Query: 2    SEPRFVHLRVHSDFSMSDGLAKVKPILAKASEDQMAALALTDNTNLCGLVKFYGGCHGAG 61
            ++P+FVHLRVHS +S+ +G   +K I+ KA  D   A+ + D  NL   ++F       G
Sbjct: 19   ADPQFVHLRVHSAYSLLEGALPLKKIIGKAVADDQPAIGIADTNNLFAALEFSQKAADDG 78

Query: 62   IKPIVGCDFFMLVP--------GFEDEFCSL---TVLAMNNEGYKNLTLLISDAYLRGHV 110
            ++PI+GC   + +         G   +F  L    ++A   +GY  L  L+S AYL G  
Sbjct: 79   LQPIIGCQLSIDMEDEAEGERRGHAHQFVKLPAIVLIAATEDGYARLVELVSRAYLEGEG 138

Query: 111  KDRAVIDQAWLERY-SEGLILLSGAKDGDVGKALLKGNQGQVDSLVAFYQTHFPDRYYLE 169
              +  I ++WL    + GLI L+GA  G V  AL  G+    ++ +      F DR Y+E
Sbjct: 139  HQQTRISRSWLAAGGTTGLIALTGAGAGPVDMALKSGSPALAEARLKALIELFGDRLYVE 198

Query: 170  LIRTGRPDEERYLHMAVELAGEKDLPVVATNQVVFIQPEQFEAHEIRVAISDGFTLADPR 229
            L R G  D  R+ +  ++LA   D+P+VATN+  F  P  ++AH+  +A++    ++D  
Sbjct: 199  LQRHGNYDR-RHENRMIDLAYRLDIPLVATNEAFFPSPSDYDAHDALMAVAHNAMVSDDS 257

Query: 230  RPRRYSEQQYFRIQDEMCELFDDIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTGDLSIE 289
            R  R +   Y + + EM  LF D+PEAL+N++E+A+RC+  ++     LP F       E
Sbjct: 258  R-FRLTPDHYLKSRKEMAALFADLPEALENTIEVARRCSFMLKTRGPILPRFTGASDDPE 316

Query: 290  DF-------LVEVSKKGLEERLEFLFPDEAQRAERRGEYDERLDVELTVINNMGFPGYFL 342
            +        L   +++GLEERL  L      + E   +Y ERL  EL VI  M FPGYFL
Sbjct: 317  EAERAEVAELRRQAEEGLEERLAKLGMAPGYKEE---DYRERLAFELGVIQRMKFPGYFL 373

Query: 343  IVMEFIQWGKDNGIPIGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402
            IV +FI+W K + IP+GPGRGSGAGSLVAYAL ITD+DP+ F LLFERFLNPERVSMPDF
Sbjct: 374  IVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDF 433

Query: 403  DVDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKM 462
            D+DFC DRR+EVI +V + YGR+ V+QIITFG++ A+A +RDVGRVL  PYG VD+I K+
Sbjct: 434  DIDFCQDRREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKL 493

Query: 463  IPAEPG--MTLAKAFEAEPALPEAYDADEEVKDLIDMCRVLEGVTRNAGKHAGGVVIAPT 520
            +P  P     L+KA E EP L E  + +  V  L+D+ + +EG+ R+A  HA G+VI   
Sbjct: 494  VPNNPANPTPLSKAIEEEPRLREEAEKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDR 553

Query: 521  VITDFAPLYCDAEGHNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPHLAKQG 580
             ++   P+Y D     PVTQF+   VE AGLVKFDFLGL+TLT++  A+  +       G
Sbjct: 554  PLSQLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAIDFV-------G 606

Query: 581  KEPVRIE--AIVLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALF 638
            K  + I+  +I LDDP ++  L R ET  VFQ+ES GM+  +  ++PDC ED+IALVAL+
Sbjct: 607  KRGIHIDLASIPLDDPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALY 666

Query: 639  RPGPLQSGMVDNFIERKHGREEVSYPDQQWQHESLKPILEPTYGIILYQEQVMQIAQVLA 698
            RPGP+++  V N   RKHG EE+     +  H  +  +L+ T G+I+YQEQVMQIAQVL+
Sbjct: 667  RPGPMENIPVYN--ARKHGEEEI-----ESIHPKIDYLLKETQGVIVYQEQVMQIAQVLS 719

Query: 699  GYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNK 758
            GY+LG AD+LRRAMGKK   EM KQR+ F +GAVKNGV    A  IFDL+ KFA YGFNK
Sbjct: 720  GYSLGEADLLRRAMGKKIKAEMDKQRARFVDGAVKNGVSKPQADLIFDLLAKFANYGFNK 779

Query: 759  SHSAAYALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLLPPDVNK 818
            SH+AAYA+VSYQT ++K H+P +F+AA M+ DM NTDKI     +  R+G+ ++ P V  
Sbjct: 780  SHAAAYAIVSYQTAYMKAHYPVEFLAASMTLDMSNTDKINDFRQDAMRLGIQVVAPSVQT 839

Query: 819  GLFRFTVDDDLNIVYGIGAIKGVGEGPVESILKAREDGPFIDLFDFCARVDLKKLNRRVI 878
                F   D+  I Y + A+KGVGE  V+ I+  R D PF  L DFC R+D K LNRRV 
Sbjct: 840  SHRHFETGDN-RIYYSLAALKGVGESAVDHIVAVRGDRPFASLEDFCLRIDPKLLNRRVF 898

Query: 879  EKLICAGALDNLGPHRAAMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDNKQQFV 938
            E LI AGA D  G  RA ++  L   +  A +  + +  GQ DMFG   +     K    
Sbjct: 899  ESLIAAGAFDCFGYDRAELIGGLDRILGFAQRAQENKVSGQSDMFG-AGAATGPEKIALP 957

Query: 939  HCTPWPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTER--GKTTKAAG 996
              TPW     L  E   LG YL+ HP++ Y   L         D     +      + AG
Sbjct: 958  PYTPWLASEKLHREFQVLGFYLSAHPLDTYNNLLAKMRVQTFADFSAAVKKGAAAGRLAG 1017

Query: 997  LVVATRVMMTKRGSKMGLVTLDDKSARLEVMLFTEAFEKFGELLEKDRILIVEGEVSFDD 1056
             V + +   T+ G+KMG+V   D S + E +LF+E   ++ +LLE  + L++   V  ++
Sbjct: 1018 TVTSKQERKTRTGNKMGIVAFSDASGQFEAVLFSEMLNQYRDLLEPGKSLVM--TVDAEE 1075

Query: 1057 FSGGNRMTARSIIDMGEARSHFAHAVEVDLDGASITPEWLGQFQQAVEPWKAGSVPLVIN 1116
               G  +  R++  + E       A+ V +         L      +     G V  ++ 
Sbjct: 1076 RPEGIGLRIRTLRSLEEESLQMQKALRVYVRDCGP----LRSIASHLNAKGDGLVSFIVI 1131

Query: 1117 YAQPTAKAQFRLGDEWRVNPTDELMLALETLTGSDKVRIL 1156
                  + +  L +++R++P  E+  AL +  G   V ++
Sbjct: 1132 KDNGQREIEVELNEKYRISP--EIAAALRSAPGVVDVELV 1169