Pairwise Alignments

Query, 1157 a.a., DNA polymerase III subunit alpha (RefSeq) from Shewanella loihica PV-4

Subject, 1170 a.a., DNA polymerase III subunit alpha from Phaeobacter inhibens DSM 17395

 Score =  806 bits (2081), Expect = 0.0
 Identities = 496/1183 (41%), Positives = 687/1183 (58%), Gaps = 61/1183 (5%)

Query: 4    PRFVHLRVHSDFSMSDGLAKVKPILAKASEDQMAALALTDNTNLCGLVKFYGGCHGAGIK 63
            PRF+HLR H+++S+ +G  ++K +     + +M A+A+TD+ NL   ++F     GAG++
Sbjct: 5    PRFIHLRTHTEYSLLEGALRLKKLPDLCKKHEMPAIAVTDSNNLFAALEFSVAASGAGVQ 64

Query: 64   PIVGCD----FFMLVPGFEDEF-CSLTVLAMNNEGYKNLTLLISDAYLRGHVKDRAVIDQ 118
            PI+GC     F    PG   +    L +LA +  GY++L  L S  Y+R    + A +  
Sbjct: 65   PIMGCQVDLRFTEPTPGERPKPPAPLVLLAQSETGYEHLMKLNSCLYMR-EGSELAHVTL 123

Query: 119  AWLERYSEGLILLSGAKDGDVGKALLKGNQGQVDSLVAFYQTHFPDRYYLELIRT----G 174
              L  +SE +I LSG  DG VG+ L  G +   ++L+   +  FPDR Y+EL R     G
Sbjct: 124  EELAAHSEDVICLSGGPDGPVGRLLQMGQRPAAEALMQRLKAMFPDRLYVELQRHPGEHG 183

Query: 175  RPDEERYLHMA-VELAGEKDLPVVATNQVVFIQPEQFEAHEIRVAISDGFTLADPRRPRR 233
            +P+ E+      VE+A   DLP+VATN V F   E +EAH+  + I++G  +      RR
Sbjct: 184  QPEAEQATERGHVEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGAYVDQAEPRRR 243

Query: 234  YSEQQYFRIQDEMCELFDDIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTGDLSIEDFLV 293
             + Q YF+ Q+EM  LF D+PEA++N+VEIAKRC       +  LP F   +++    L 
Sbjct: 244  LTAQHYFKSQEEMVALFADLPEAIENTVEIAKRCAFMAYRRDPILPKFADDEVAE---LR 300

Query: 294  EVSKKGLEERLEFLFPDEAQRAERRGEYDERLDVELTVINNMGFPGYFLIVMEFIQWGKD 353
             ++ +GL++RL  +       A    +Y ERLD EL +I  MGFPGYFLIV +FIQW KD
Sbjct: 301  RIANEGLQQRLAVI-----PHAVSVEDYQERLDFELGIIEGMGFPGYFLIVADFIQWAKD 355

Query: 354  NGIPIGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDE 413
            + IP+GPGRGSGAGSLVAYAL ITDLDPL + LLFERFLNPERVSMPDFD+DFCMDRR+E
Sbjct: 356  HDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREE 415

Query: 414  VIDHVAELYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKMIPAE--PGMTL 471
            VI +V E YGRD V QIITFG + +KA VRD+GRVL  PYG VDR+SK+IP E    M++
Sbjct: 416  VIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSKLIPVEGVKPMSI 475

Query: 472  AKAFEAEPALPEAYDADEEVKDLIDMCRVLEGVTRNAGKHAGGVVIAPTVITDFAPLYCD 531
              +   EP L E  + +E V  L+     +EG+ R+AG HA GVVI    +    PLY D
Sbjct: 476  VDSLREEPRLREEAENEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIGDRPLDALVPLYRD 535

Query: 532  AEGHNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMI-----NPHLAKQGKE---- 582
                 P TQF+   VE AGLVKFDFLGL+TLT+I  A+ +I     + H+A  G +    
Sbjct: 536  PRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDLHVAADGTQLYDP 595

Query: 583  ----PVRIEAIVLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALF 638
                  +I AI LDD  ++ L  R +T AVFQ+ES GM D +KR++P C ED++ALVAL+
Sbjct: 596  PEGAENQINAIPLDDTVTYDLYSRAKTVAVFQVESTGMMDALKRMKPTCIEDIVALVALY 655

Query: 639  RPGPLQSGMVDNFIERKHGREEVSYPDQQWQHESLKPILEPTYGIILYQEQVMQIAQVLA 698
            RPGP+++  +  + E K+G  ++     Q  H  +  ILE T GII+YQEQVMQIAQV+A
Sbjct: 656  RPGPMEN--IPVYCEVKNGLRKI-----QSVHPLIDHILEETQGIIVYQEQVMQIAQVMA 708

Query: 699  GYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNK 758
             YTLGGAD+LRRAMGKK  E M  +R  FE+GA +NGV  + A ++FDL+EKFA YGFNK
Sbjct: 709  NYTLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVPAKKASEVFDLLEKFANYGFNK 768

Query: 759  SHSAAYALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECER-MGLPLLPPDVN 817
            SH+AAYA+VSYQT WLK + P +FMA VM+ D+  TDK+    +E ++ + LP +PP VN
Sbjct: 769  SHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLSLPYVPPCVN 828

Query: 818  KGLFRFTVDDDLNIVYGIGAIKGVGEGPVESILKAR----EDGPFIDLFDFCARVDLKKL 873
            +    F V     +VY +GA+K VG   +  +  AR    ED PF  LFDF  RVDLKK+
Sbjct: 829  RSEATFNVVKG-ELVYALGALKNVGVEAMRLVTAARRESGEDKPFATLFDFARRVDLKKV 887

Query: 874  NRRVIEKLICAGALDNLGPHRAAMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDN 933
             +R +E L  AG  D L P+R  +  +L   +  +          Q  +FG      ED 
Sbjct: 888  GKRPLEMLARAGGFDQLDPNRRRVFDSLGALVDYSSAVHDQRNSSQVSLFG---EAGEDL 944

Query: 934  KQQFVHCTP-WPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDV-HPTERGK- 990
             +  +  TP W     L  E   +G YL+GHP++ Y+  LK      L +V    ERG  
Sbjct: 945  PEPRLPGTPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVTAKAERGPF 1004

Query: 991  TTKAAGLVVATRVMMTKRGSKMGLVTLDDKSARLEVMLFTEAFEKFGELLEKDRILIVEG 1050
              K AG+V   +   + RG++     L D S   EV LF+E  EK  E LE    +++  
Sbjct: 1005 MAKMAGVVAGRQERKSARGNRFAFAQLSDTSGGYEVTLFSEVLEKSREFLETGAKVVITA 1064

Query: 1051 EVSFDDFSGGNRMTARSIIDMGEARSHFAH-AVEVDLDGAS---ITPEWLGQFQQAVEPW 1106
            E + +  S   ++  RS+  +  A +     ++ V +  AS      + L   + A    
Sbjct: 1065 EATME--SDQLKLLVRSVGPVDAAIADAGRSSLRVYISQASAVATVAQVLEDAKSAARNA 1122

Query: 1107 KAGSVPLVINYAQPTAKAQFRLGDEWRVNPTDELMLALETLTG 1149
              G V + +         +  LG  + +NP  ++  AL++L G
Sbjct: 1123 SRGEVYMYLQDPGLPGDVEMDLGQPFPINP--QIKGALKSLDG 1163