Pairwise Alignments

Query, 1157 a.a., DNA polymerase III subunit alpha (RefSeq) from Shewanella loihica PV-4

Subject, 1172 a.a., DNA polymerase III subunit alpha from Ralstonia sp. UNC404CL21Col

 Score = 1080 bits (2792), Expect = 0.0
 Identities = 584/1190 (49%), Positives = 789/1190 (66%), Gaps = 52/1190 (4%)

Query: 1    MSEPRFVHLRVHSDFSMSDGLAKVKPILAKASEDQMAALALTDNTNLCGLVKFYGGCHGA 60
            M+ PRFVHLR+HS++S+ DG  ++   +  A++D M ALALTD  N  GLV+FY    G 
Sbjct: 1    MNSPRFVHLRLHSEYSVVDGNVRLDDAVKAAAKDGMGALALTDLANAFGLVRFYKEARGK 60

Query: 61   GIKPIVGCDFFMLVPGFEDEFCSLTVLAMNNEGYKNLTLLISDAYLRGHVKDRAVIDQAW 120
            G+KPIVG D ++      D+   L +L  + +GY NL  L++ A+L    + RA I   W
Sbjct: 61   GVKPIVGADVWITNHDERDKPTRLLLLVRDKQGYLNLCQLLARAWLSNQHRGRAEIAPEW 120

Query: 121  LER-------YSEGLILLSGAKDGDVGKALLKGNQGQVDSLVAFYQTHFPDRYYLELIRT 173
             +         + GL+ LSGA  GD+G AL  GN      L   +   FP  +Y+EL R 
Sbjct: 121  FDEPGVENAPLATGLLALSGAMAGDIGMALANGNDALARKLATHWSRVFPGAFYIELQRA 180

Query: 174  GRPDEERYLHMAVELAGEKDLPVVATNQVVFIQPEQFEAHEIRVAISDGFTLADPRRPRR 233
            G    E Y+  AV+LA    LPVVAT+ V F+ P+ F AHE R  I++G  LA+PRR RR
Sbjct: 181  GHAGTEAYIQQAVKLASAMQLPVVATHPVQFMTPDDFTAHEARTCIAEGELLANPRRARR 240

Query: 234  YSEQQYFRIQDEMCELFDDIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTGD-LSIEDFL 292
            ++ +QYF+ QDEMC LF DIP AL N+V+IA+RCN+ + LG+  LP FPT D +S++D+L
Sbjct: 241  FTTEQYFKTQDEMCALFADIPSALANAVQIAQRCNLKLELGKPKLPLFPTPDGMSLDDYL 300

Query: 293  VEVSKKGLEERLEFLFPDEAQRAERRGEYDERLDVELTVINNMGFPGYFLIVMEFIQWGK 352
            V+++K+GLE+R+E LFPDEA R  +R EY  RL+ E   I  MGFPGYFLIV +FI W K
Sbjct: 301  VQLAKEGLEKRMEVLFPDEAVRESKRAEYYARLEFETGTIIKMGFPGYFLIVADFINWAK 360

Query: 353  DNGIPIGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRD 412
            +NG+P+GPGRGSGAGSLVAYAL ITDLDPL+++LLFERFLNPERVSMPDFD+DFC   RD
Sbjct: 361  NNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQHGRD 420

Query: 413  EVIDHVAELYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKMIPAEPG--MT 470
             VI +V E YG+DAVSQI TFGTMAAKA VRDVGRVL   Y FVD ++K+IP +PG  +T
Sbjct: 421  RVIQYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKLVT 480

Query: 471  LAKAFEAEPALPEAYDADEEVKDLIDMCRVLEGVTRNAGKHAGGVVIAPTVITDFAPLYC 530
            L +A + EP L E    +EEVK L+++ + +EG+TRN G HAGGV+IAP  +TDF PLY 
Sbjct: 481  LEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYT 540

Query: 531  D-AEGHNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWA---LQMINPHLAKQGKEPVRI 586
               E    V+Q+DK+DVE  GLVKFDFLGL TLTI+DWA   ++M++P      K     
Sbjct: 541  QGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLDP-----SKADWNC 595

Query: 587  EAIVLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSG 646
              I L D  +F +L+   T AVFQLESRGM+ ++K  +PD FED+IALVAL+RPGP+   
Sbjct: 596  SHIPLTDKKAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMD-- 653

Query: 647  MVDNFIERKHGREEVSYPDQQWQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGAD 706
            ++ +F  RKHGRE+V YPD +     ++P+L+ TYGI++YQEQVMQ+AQ++ GY+LGGAD
Sbjct: 654  LIPSFCARKHGREKVEYPDPR-----VEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGAD 708

Query: 707  MLRRAMGKKKPEEMAKQRSVFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766
            +LRRAMGKKKPEEMA+ R +F  GA K+G+  E A +IFDL+EKFAGYGFNKSH+AAYAL
Sbjct: 709  LLRRAMGKKKPEEMAQHRELFRAGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYAL 768

Query: 767  VSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECE-RMGLPLLPPDVNKGLFRFTV 825
            ++Y T WLK H PA+FMAA MS  MD+TDK+  L D+   + GL +LPPD+N   +RF  
Sbjct: 769  LAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDARGKNGLTILPPDINASQYRFAP 828

Query: 826  DDDLNIVYGIGAIKGVGEGPVESILKAREDGPFIDLFDFCARVDLKKLNRRVIEKLICAG 885
             D   I YG+G +KG G+G +E IL+AREDGPF DLFDFC RVD +++NRR IE L+ AG
Sbjct: 829  TDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRAG 888

Query: 886  ALDNLGPHRAAMMATLPEAIRAADQHAKAEAIGQHDMFGLLN-SEPEDNKQQFVHCTPWP 944
            A D+L  +RA ++A++  A+ AA+Q  KA A  Q  +F L++  + E ++ + V    W 
Sbjct: 889  AFDSLNANRAQLLASIGLAMEAAEQ--KAAAANQVSLFDLMSGDDAEQHRPELVDEPAWT 946

Query: 945  DKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDV--HPTERG----------KTT 992
             K  L+ E+  LG YL+GH  ++Y  E++ +    L D+    T++G          +  
Sbjct: 947  TKRKLQEEKQALGFYLSGHLFDEYRDEVRRFARTTLADLAREVTDKGNGGGYGNRDARNK 1006

Query: 993  KAAGLVVATRVMMTKRGSKMGLVTLDDKSA--RLEVMLFTEAFEKFGELLEKDRILIVEG 1050
              AG++V  R  MT+RG KM +V LDD SA    EV +F E FE    L ++D +LIV+G
Sbjct: 1007 TVAGVIVGQRTQMTQRG-KMLIVMLDDGSASEATEVTVFNEVFEANRALFKEDEVLIVQG 1065

Query: 1051 EVSFDDFSGGNRMTARSIIDMGEARSHFAHAVEVDLDGASITPEWLGQFQQAVEPWKA-- 1108
                D F+GG R+TA S++DM +AR+ FA A+ + ++G S       + +  + P  A  
Sbjct: 1066 SARHDMFTGGVRVTAESVMDMTQARAKFARAIRLSMNGDSTA----AKLRDLLSPHVAAD 1121

Query: 1109 -GSVPLVINYAQPTAKAQFRLGDEWRVNPTDELMLALETLTGSDKVRILF 1157
               V + INY    A+ +  LGD WR+ P++  + AL     ++ V  ++
Sbjct: 1122 GNGVSVRINYVCEQARCEAVLGDAWRIVPSEAAIAALRQALDAENVATVY 1171