Pairwise Alignments

Query, 1157 a.a., DNA polymerase III subunit alpha (RefSeq) from Shewanella loihica PV-4

Subject, 1185 a.a., DNA polymerase III subunit alpha from Bifidobacterium breve UCC2003

 Score =  647 bits (1669), Expect = 0.0
 Identities = 410/1195 (34%), Positives = 635/1195 (53%), Gaps = 75/1195 (6%)

Query: 6    FVHLRVHSDFSMSDGLAKVKPILAKASEDQMAALALTDNTNLCGLVKFYGGCHGAGIKPI 65
            FV L  H+ +S+ DG +K+  +  +A+E +M A+ +TD+ N+ G  + Y  C   G+KPI
Sbjct: 8    FVQLHNHTHYSLLDGASKIPDLAKRAAELEMPAVGITDHGNMHGAYEMYTNCVANGVKPI 67

Query: 66   VGCDFFMLVPGFEDE---------------------FCSLTVLAMNNEGYKNLTLLISDA 104
            +G + ++       +                        LT+ A N+EG  NL    S A
Sbjct: 68   IGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSVA 127

Query: 105  YLRGHVKDRAVIDQAWLERYSEGLILLSGAKDGDVGKALLKGNQGQVDSLVAFYQTHF-P 163
             L G V     +D+  L  YS+G+I  SG   G +   L  G   +       +Q  F  
Sbjct: 128  NLEGRVMRYPRMDKEVLSTYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFGK 187

Query: 164  DRYYLELIRTGRPDEERYLHMAVELAGEKDLPVVATNQVVFIQPEQFEAHEIRVAISDGF 223
            D +++EL+  G   E +     + +A + D P++ATN   ++  E   A +  + I+ G 
Sbjct: 188  DNFFIELMDHGLTIENQVTDDLLTIAKKLDAPLLATNDSHYVHAEDAGAQDAMLCINSGS 247

Query: 224  TLADPRRPRRYSEQQYFRIQDEMCELFDDIPEALQNSVEIAKRCNVTVRLGE--YFLPNF 281
             L DP R +      Y +  +EM ELF D P+A  N++ IA+RCNV     E   F+P F
Sbjct: 248  RLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLLIAERCNVMFDDHEDGAFMPQF 307

Query: 282  PTGDLSIEDFL-VEVSKKGLEERLEFLFPDEAQRAERRGEYDERLDVELTVINNMGFPGY 340
            P  +   E  L ++  ++GLE+R     P    +         + D E  VI  M F GY
Sbjct: 308  PCPEGWDETSLFLKKVEEGLEKRYNGNPPLNVLK---------QADYECGVICQMQFCGY 358

Query: 341  FLIVMEFIQWGKDNGIPIGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP 400
            FL+V ++IQW KD+GI +GPGRGS AG++VAY++ IT+LDPL+  L+FERFLNPERVS+P
Sbjct: 359  FLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLP 418

Query: 401  DFDVDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRIS 460
            D DVDF  + R  VI++  E YG D V+Q + +GT+  K  ++D  R++G+ +   ++++
Sbjct: 419  DIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKVT 478

Query: 461  KMIP--AEPGMTL---------AKAFEAEPALPEAYDADEEVKDLIDMCRVLEGVTRNAG 509
            K +P  A  G  +         AK +       E YD+D + K + +  + +EG+ R  G
Sbjct: 479  KALPPAATGGKDISLHDIFDPSAKRYAEAREFREMYDSDPDAKRITEEAKGIEGLIRQTG 538

Query: 510  KHAGGVVIAPTVITDFAPLYCDAEGHNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWAL 569
             HA   ++    ITD +PL    +G    T F+ +  ET GLVK DFLGL  LT+I   L
Sbjct: 539  VHACATIMGSAPITDTSPLLERTDG-TITTTFEYHTCETLGLVKMDFLGLSNLTVIHDTL 597

Query: 570  QMINPHLAKQGKEPVRIEAIVLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFE 629
            + I  +    GK  +    I LDD  +++L+ R +T  VFQL+S GM+ L+K L+PD F 
Sbjct: 598  KNIEAN----GKPAIDYTKIPLDDAETYKLMARGDTLGVFQLDSDGMRSLLKTLKPDNFN 653

Query: 630  DMIALVALFRPGPLQSGMVDNFIERKHGREEVSYPDQQWQHESLKPILEPTYGIILYQEQ 689
            D+ AL+AL+RPGP+      N+ +RK+G ++++ P      E LK +L+ TYG+I+YQEQ
Sbjct: 654  DISALIALYRPGPMSMDSHTNYAKRKNGLQKIT-PIHPELEEPLKQVLDETYGLIIYQEQ 712

Query: 690  VMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAVKNGVDGELAMKIFDLVE 749
            V   A++LAGY+LG AD+LRRAMGKKKPE +AK++  F  G  ++G   E A  ++D++ 
Sbjct: 713  VQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEAANAVWDILV 772

Query: 750  KFAGYGFNKSHSAAYALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGL 809
             F+GY FNK+HSAAY L+SY T +LKTH+P +FMAA++     N DK    + E  RMG+
Sbjct: 773  PFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGI 832

Query: 810  PLLPPDVNKGLFRFTVDDDLNIVYGIGAIKGVGEGPVESILKARED--GPFIDLFDFCAR 867
             +L PDVN+ ++ ++   D+ + +G+GAI+ VG+  V  I+  RE   G F++  DF  R
Sbjct: 833  QVLSPDVNESVYAYSAVGDV-VRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRR 891

Query: 868  VDLKKLNRRVIEKLICAGALDNLGPHRAAMMATLPEAIRAADQHAKAEAIGQHDMFGLLN 927
            V L  LNRR++E LI AGA D++ P+R A+      AI +     + +A GQ D+F    
Sbjct: 892  VPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLF---- 947

Query: 928  SEPEDNKQQFV--------HCTPWPDKVWLEGERDTLGLYLTGHPIN---QYLKELKHYT 976
            S+ +D   + +            W  K  L  ER+ LGLY++ HP++     L  L+  +
Sbjct: 948  SDADDGGAEAMGDASVTVPDIEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMS 1007

Query: 977  SGRLKDVHPT-ERGKTTKAAGLVVATRVMMTKRGSKMGLVTLDDKSARLEVMLFTEAFEK 1035
               L D   T   G+    AGL+      ++K+G+   +VT++D  + ++ M F + +E 
Sbjct: 1008 IAHLIDRAKTMGEGQQVTLAGLITGVDRRVSKKGNPWAIVTIEDMESSIQCMFFGKVYEA 1067

Query: 1036 FGELLEKDRILIVEGEVSFDDFSGGNRMTARSIIDMGEARSHFAHAVEVDLDGASITPEW 1095
                L  D I+ + G+V   D +   R T    + +    S     + + L  A++  + 
Sbjct: 1068 AAAELAVDAIVQIRGQVELRDETVSMRATE---LQVPTLESEDERPLTITLPHAALDRQH 1124

Query: 1096 LGQFQQAVEPWKAGSVPLVINYAQPTAKAQ-FRLGDEWRVNPTDELMLALETLTG 1149
            + Q  Q +     G   + +        AQ    GD +RV     L   ++ L G
Sbjct: 1125 MMQLGQVLTN-HPGYCEVHLAVMDEKGNAQVLTFGDRFRVKRDTSLFAEIKILFG 1178