Pairwise Alignments

Query, 578 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

Subject, 223 a.a., Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) from Acidovorax sp. GW101-3H11

 Score =  127 bits (320), Expect = 3e-34
 Identities = 89/224 (39%), Positives = 124/224 (55%), Gaps = 19/224 (8%)

Query: 367 NNPAEGKDLSIIYQDEAIAVVNKPAEFLSVPGK--HVTDSVYSRMRQAFPKATGPLIVHR 424
           N P  G  +  +Y+D  + V+ KPA  L VPG+     D + +R ++ +P   G LIVHR
Sbjct: 6   NEPLAG-GVQAVYEDADLLVLQKPAGLLCVPGRGPDKQDCLSARAQERWP---GALIVHR 61

Query: 425 LDMSTSGLMVIALSSEANTALVQQFIGRTVEKRYLARVAGEVQGEE---GEITLPLRVDL 481
           LD +TSGL+++A   +A   L   F  R V KRY A V G +   E    EI LP+  D 
Sbjct: 62  LDQATSGLVLMARHIDAQRRLSHAFAERQVHKRYQAVVQGLLGPAEQTWQEIDLPIAADW 121

Query: 482 DDRPRQLVCFEHGKHAHTYWLVKSRG--EGTTLLSLFPKTGRTHQLRVHCAHQDGLGMPI 539
           + RP +++    GK + T W  +++    GTT + L P TGRTHQLRVH A    +G PI
Sbjct: 122 ERRPLRVIDPALGKPSLTRWRPRAQDPVAGTTHVELEPVTGRTHQLRVHLA---AIGHPI 178

Query: 540 IGDDLYG-----AKANRLHLHAQYLAFNHPISGERVSFSCDPDF 578
           +GD LY      A+A RL LHA +LAF HP +G  ++     +F
Sbjct: 179 LGDALYADAATQAQAPRLLLHASHLAFTHPGTGAWLALEWAAEF 222