Pairwise Alignments

Query, 300 a.a., histone deacetylase superfamily protein (RefSeq) from Shewanella loihica PV-4

Subject, 323 a.a., histone deacetylase from Ralstonia solanacearum GMI1000

 Score =  202 bits (513), Expect = 1e-56
 Identities = 119/300 (39%), Positives = 158/300 (52%), Gaps = 6/300 (2%)

Query: 1   MVPLVYHASYSQLALPHHHRFPITKYQALYQYLLDRQIVDPTAFHSPEAVSLEWLKSIHC 60
           M+   ++  +  L LP  HRFP+ KY  L +  L    V     H       + L   H 
Sbjct: 1   MLMQAFYTDHFVLPLPPGHRFPMRKYSLLRERALAE--VPGLVMHEAPRAGDDALLLAHA 58

Query: 61  PDYVMQFIEQRLPDKAVRRLGFPLSERLTQRTLYSVGGTHLACELAVRHGVALQLSGGYH 120
           PDYV      RL     R +GFP S  + +R+  S G T  ACE A+  G+A+ L+GG H
Sbjct: 59  PDYVSAVGAGRLDPARQREIGFPWSPEMVERSRRSAGATMAACEAAMADGIAVNLAGGTH 118

Query: 121 HAHYQFGSGYCVFNDLISAALHAQSLAGIVT----VLIFDCDVHQGDGTAAMGQAYDNLY 176
           HA+   G G+CVFND   A+   Q   G       V I D DVHQG+GTA++ +   +++
Sbjct: 119 HAYADKGGGFCVFNDAAIASRWMQRRPGRTPEHFPVAIVDLDVHQGNGTASILRDDASVF 178

Query: 177 TCSIHCQENFPARKQTSDLDLELSRGVGDEEYLEAVAQTLALAIRLYQPDLIIYDAGVDV 236
           T S H ++N+P RK+ SDLD+ L  G GD  YLEA+A  L      + P LIIY AG D 
Sbjct: 179 TLSEHGEKNYPFRKEASDLDVGLPDGCGDAAYLEALAGALDTLAARFAPRLIIYLAGADP 238

Query: 237 HQADRLGHLNITTEGIYQRDRLVLDNAKAASIPIACVVGGGYSKEIEVLAERHAQVFIAA 296
           H+ DRLG L +T +G+ +RDR V D A    IPIA  + GGY   I+     HAQ    A
Sbjct: 239 HEGDRLGRLRLTMDGLARRDRQVFDFAFLRRIPIAVTMAGGYGNNIDDTVAVHAQTIALA 298