Pairwise Alignments

Query, 300 a.a., histone deacetylase superfamily protein (RefSeq) from Shewanella loihica PV-4

Subject, 307 a.a., deacetylase from Ralstonia solanacearum GMI1000

 Score = 63.2 bits (152), Expect = 7e-15
 Identities = 68/291 (23%), Positives = 116/291 (39%), Gaps = 26/291 (8%)

Query: 4   LVYHASYSQLALPHHHRFPITKYQALYQYLLDRQIVD-PTAFHSPEAVSLEWLKSIHCPD 62
           L  H  + +  + HHH     + +A+   L+  +I        +P A   + L  +H P+
Sbjct: 5   LYTHPEFLKHEMGHHHPECPDRLRAIEDQLIASRIEQFLVPCEAPPATEAQ-LCRVHRPE 63

Query: 63  YVMQFIEQRLPDKAVRRLGFPLSERLTQRTLYSVGGTHLACELAVRHG---VALQLSGGY 119
           YV + +       +V   G+   +  T    ++     LA   AV+     +A  L   +
Sbjct: 64  YVRELVA------SVPIAGYAPIDPDTAMNPHTYMAAVLAAGAAVQATDKVIAGALENAF 117

Query: 120 -------HHAHYQFGSGYCVFNDLISAALHAQSLAGIVTVLIFDCDVHQGDGTAAMGQAY 172
                  HHA      G+C FN++  AA HA    G+  V I D DVH G+GT A  +  
Sbjct: 118 CCVRPPGHHAEPGRAMGFCFFNNVAVAARHALDHHGLARVAIVDFDVHHGNGTEAAFRDE 177

Query: 173 DNLYTCSIHCQENFP----ARKQTSDLDLELSRGVGDEEYLEAVAQTLALAIRLYQPDLI 228
             +  CS      +P         + +++ L          E V       +  ++P+++
Sbjct: 178 PRVLMCSFFQHPFYPYSGTEGVAANMVNIPLPAYTNGLTVREVVETIWLPRLDAFRPEML 237

Query: 229 IYDAGVDVHQADRLGHLNITTEGIY---QRDRLVLDNAKAASIPIACVVGG 276
              AG D H+ D LG + +  E  Y    R  + +  A A    ++C+ GG
Sbjct: 238 FISAGFDAHREDDLGQMGL-VEADYAWITRQLMQVARAHAKGRIVSCLEGG 287