Pairwise Alignments

Query, 300 a.a., histone deacetylase superfamily protein (RefSeq) from Shewanella loihica PV-4

Subject, 324 a.a., histone deacetylase from Ralstonia solanacearum IBSBF1503

 Score =  201 bits (510), Expect = 2e-56
 Identities = 118/305 (38%), Positives = 162/305 (53%), Gaps = 8/305 (2%)

Query: 1   MVPLVYHASYSQLALPHHHRFPITKYQALYQYLLDRQIVDPTAFHSPEAVSLEWLKSIHC 60
           M+   ++  +  L LP  HRFP+ KY  L + +     V     H       + L   H 
Sbjct: 1   MLMQAFYTDHFVLPLPPGHRFPMRKYSLLRERIAAE--VPGLVLHEAPRAGDDALLLAHA 58

Query: 61  PDYVMQFIEQRLPDKAVRRLGFPLSERLTQRTLYSVGGTHLACELAVRHGVALQLSGGYH 120
           PDY+      +L     R +GFP S  + +R+  S G T  ACE A+  G+A+ L+GG H
Sbjct: 59  PDYIDAVGAGKLDPARQREIGFPWSPAMVERSRRSAGATMAACEAAMADGIAVNLAGGTH 118

Query: 121 HAHYQFGSGYCVFNDLISAALHAQSLAGIVT----VLIFDCDVHQGDGTAAMGQAYDNLY 176
           HA+   G G+CVFND   AA   Q   G       V I D DVHQG+GTA++ +   +++
Sbjct: 119 HAYADKGGGFCVFNDAAIAARWMQRRPGRAPEDFPVAIVDLDVHQGNGTASILRDDASVF 178

Query: 177 TCSIHCQENFPARKQTSDLDLELSRGVGDEEYLEAVAQTLALAIRLYQPDLIIYDAGVDV 236
           T S+H ++N+P RK+ SDLD+ L  G GD  YLEA+A  L      + P LIIY AG D 
Sbjct: 179 TLSVHGEKNYPFRKEASDLDVGLPDGCGDAAYLEALAGALDALAARFAPCLIIYLAGADP 238

Query: 237 HQADRLGHLNITTEGIYQRDRLVLDNAKAASIPIACVVGGGYSKEIEVLAERHAQ--VFI 294
           H+ DRLG L +T +G+ +RD+ V D A    IPIA  + GGY   I+     HAQ     
Sbjct: 239 HEGDRLGRLKLTMDGLARRDQQVFDFAFLQRIPIAITMAGGYGNNIDDTVAVHAQTIALA 298

Query: 295 AAHAI 299
           A HA+
Sbjct: 299 ARHAV 303