Pairwise Alignments

Query, 300 a.a., histone deacetylase superfamily protein (RefSeq) from Shewanella loihica PV-4

Subject, 309 a.a., histone deacetylase family protein from Rhodopseudomonas palustris CGA009

 Score = 74.7 bits (182), Expect = 2e-18
 Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 24/222 (10%)

Query: 90  QRTLYSVGGTHLACELAVRHG------VALQLSGGYHHAHYQFGSGYCVFNDLISAALHA 143
           +  L  VGG+  A + AV  G      VA +  G  HHA      G+C F +   AA +A
Sbjct: 91  EAALRGVGGSVAAVD-AVMKGEAANAFVATRPPG--HHAEITKPMGFCFFGNAAIAARYA 147

Query: 144 QSLAGIVTVLIFDCDVHQGDGTAAMGQAYDNLYTCSIHCQENFPARKQTSD-------LD 196
           Q   GI    + D DVH G+GT  +      +  CS H    FP      +       ++
Sbjct: 148 QRQYGIERAAVVDFDVHHGNGTQDIFWGDRTVMYCSTHQMPLFPGTGSQGERGEYDNIVN 207

Query: 197 LELSRGVGDEEYLEAVAQTLALAIRLYQPDLIIYDAGVDVHQADRLGHLNITTEGI-YQR 255
             L+   G  E+  A  Q +   ++ + P+LI+  AG D H  D L  LN+  E   +  
Sbjct: 208 APLASEDGGTEFRFAFEQLILPQLKRFSPELIVISAGFDAHYRDPLASLNLRAEDFGWVT 267

Query: 256 DRLVLDNAKAASIPIACVVGGGYSKEIEVLAERHAQVFIAAH 297
           +RL+   A+ A   I  V+ GGY  +++ L+E      +AAH
Sbjct: 268 ERLMEVAAQTAGGRIVSVLEGGY--DLQGLSES-----VAAH 302