Pairwise Alignments

Query, 300 a.a., histone deacetylase superfamily protein (RefSeq) from Shewanella loihica PV-4

Subject, 372 a.a., class II histone deacetylase from Pseudomonas sp. BP01

 Score = 73.6 bits (179), Expect = 7e-18
 Identities = 66/241 (27%), Positives = 98/241 (40%), Gaps = 18/241 (7%)

Query: 55  LKSIHCPDYVMQFIEQRLPDKAVRRLG-FPLSERLTQRTLYSVGGTHLACELAVRHGV-- 111
           L  +H P YV + +    P  +    G  P+          + G    ACE  V   V  
Sbjct: 68  LLRVHTPAYVDRILNPTGPAWSDAGDGETPVGPGSADVARLAAGAVIAACEAVVAGTVSN 127

Query: 112 --ALQLSGGYHHAHYQFGSGYCVFNDLISAALHAQSLAGIVTVLIFDCDVHQGDGTAAMG 169
             AL    G HHA    G GYC+F++      H Q    +  V I D DVH G+GT  + 
Sbjct: 128 AYALIRPPG-HHAVADQGMGYCIFHNTAVGIRHLQHTGAVARVAIIDWDVHHGNGTETLF 186

Query: 170 QAYDNLYTCSIHCQENFPARKQTSD-----------LDLELSRGVGDEEYLEAVAQTLAL 218
               ++ T S+H    +P  +   D           L++ L  G G   Y+ A  + +  
Sbjct: 187 YDDPSVLTISLHQDGLYPIGRGKVDDIGAGAGIGANLNIPLPAGSGRGAYVGAFERVVIP 246

Query: 219 AIRLYQPDLIIYDAGVDVHQADRLGHLNITTEGIYQRDRLVLDNA-KAASIPIACVVGGG 277
           AIR ++PDLI+  +G D    D  G   + +E   +   LV+  A +     +  V  GG
Sbjct: 247 AIRRFRPDLIVIASGFDSAAMDPFGRQLLHSEAYRELTTLVMRLADEVCKSRVVAVHEGG 306

Query: 278 Y 278
           Y
Sbjct: 307 Y 307