Pairwise Alignments

Query, 300 a.a., histone deacetylase superfamily protein (RefSeq) from Shewanella loihica PV-4

Subject, 308 a.a., histone deacetylase from Phaeobacter inhibens DSM 17395

 Score = 67.8 bits (164), Expect = 3e-16
 Identities = 56/188 (29%), Positives = 79/188 (42%), Gaps = 13/188 (6%)

Query: 120 HHAHYQFGSGYCVFNDLISAALHAQSLAGIVTVLIFDCDVHQGDGTAAMGQAYDNLYTCS 179
           HHA      G+C F +   AA HA    G+  V + D DVH G+GT  +   +D      
Sbjct: 121 HHAETDTAMGFCFFGNAALAAKHALDHHGLARVAVVDFDVHHGNGTQDL--LWDEPRALF 178

Query: 180 IHCQEN--FPARKQTSD-------LDLELSRGVGDEEYLEAVAQTLALAIRLYQPDLIIY 230
           I  Q+   +P   +  +       L+L L  G G  +   A        +R ++P+LII 
Sbjct: 179 ISSQQMPLWPGSGRPEEDGVHGQILNLPLPPGSGGVQMKAAYVDQAFPRLRAFKPELIIV 238

Query: 231 DAGVDVHQADRLGHLNITTEGIYQRDR-LVLDNAKAASIPIACVVGGGYS-KEIEVLAER 288
            AG D HQ D L  LN +TE      R L    A+     I   + GGY    +   A+ 
Sbjct: 239 SAGFDAHQDDPLAELNWSTEDFRWLSRELCALAAELCGGRIVSTLEGGYDLNALAAAAKA 298

Query: 289 HAQVFIAA 296
           H +  I A
Sbjct: 299 HVEELIEA 306