Pairwise Alignments

Query, 300 a.a., histone deacetylase superfamily protein (RefSeq) from Shewanella loihica PV-4

Subject, 344 a.a., histone deacetylase superfamily from Marinobacter adhaerens HP15

 Score = 60.1 bits (144), Expect = 7e-14
 Identities = 73/284 (25%), Positives = 113/284 (39%), Gaps = 63/284 (22%)

Query: 47  PEAVSLEWLKSIHCPDYV-------MQFIEQRLPDKAVRRL--GFPLSERLTQRTLYSVG 97
           PE   LE +K +H  DYV        +++    P +A+  +  G  +  RL +     +G
Sbjct: 51  PEEFGLEPVKRVHTADYVAFLETCWQEWLAAGKPGEAIPAVWAGRGMRHRLPRDIDGRLG 110

Query: 98  GTHLACELAVRHG----------VALQ----LSGGY-----------HHAHYQFGSGYCV 132
               A E ++  G          VAL     ++GG            HHAH     GYC 
Sbjct: 111 YYSFAAETSISDGTWEAARASANVALTAQKLVAGGERAAFALCRPPGHHAHADLFGGYCF 170

Query: 133 FNDLISAALHAQSLA--GIVTVLIFDCDVHQGDGTAAMGQAYDNLYTCSIHCQEN--FPA 188
           FN+   AA+ AQ+    G   V + D D H G+GT A+    +++ T S+H   +  FP 
Sbjct: 171 FNN---AAIVAQAFRDQGYGKVAVLDVDFHHGNGTQAIFYDRNDVLTISLHGDPDLVFPH 227

Query: 189 RKQTSDLDLELSRGVGDEEYLEAV-------------AQTLALAIRLYQPDLIIYDAGVD 235
                D   E+  G G+   L  V              +T    I+ ++PD ++   GVD
Sbjct: 228 FLGFED---EIGEGAGEGYNLNIVYPPNTPYSVWSQGLETACERIQSFKPDALVVALGVD 284

Query: 236 VHQADRLGHLNITTEGIYQRDRLVLDNAKAA-SIPIACVVGGGY 278
             + D +    + +      D L L    AA  +P    + GGY
Sbjct: 285 TFEEDPISFFKLNS-----GDYLTLGQRLAALGLPTVFTMEGGY 323