Pairwise Alignments

Query, 300 a.a., histone deacetylase superfamily protein (RefSeq) from Shewanella loihica PV-4

Subject, 315 a.a., histone deacetylase superfamily from Marinobacter adhaerens HP15

 Score = 59.7 bits (143), Expect = 8e-14
 Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 22/187 (11%)

Query: 120 HHAHYQFGSGYCVFNDLISAALHAQSLAGIVTVLIFDCDVHQGDGTAAMGQAYDNLYTCS 179
           HHA      G+C  N+   AA H +  A    ++I D D+H G G   +     ++   S
Sbjct: 133 HHARRDAAGGFCYLNNAAIAAEHMK--ARFPKIVILDTDMHHGQGIQEIFYDRSDVLYIS 190

Query: 180 IHCQ-------------ENFPARKQTSDLDLELSRGVGDEEYLEAVAQTLALAIRLYQPD 226
           IH               E         ++++ +  G  ++++   +   LA AI+L+QPD
Sbjct: 191 IHGDTTNFYPVVSGFENERGEGEGFGYNINMPMPHGSTEDDFFAKLDDALA-AIKLFQPD 249

Query: 227 LIIYDAGVDVHQADRLGHLNITTEGIYQRDRLVLDNAKAASIPIACVVGGGYSKEIEVLA 286
            II   G D+++ D    +++++EG  +    +  + +   +P   V  GGY  +++ L+
Sbjct: 250 AIILALGFDIYKNDPQAKVSVSSEGFCR----LSTHVRQLGLPTLVVQEGGY--DLDALS 303

Query: 287 ERHAQVF 293
           E   Q F
Sbjct: 304 ENVQQFF 310