Pairwise Alignments

Query, 300 a.a., histone deacetylase superfamily protein (RefSeq) from Shewanella loihica PV-4

Subject, 368 a.a., histone deacetylase superfamily protein from Marinobacter adhaerens HP15

 Score = 70.9 bits (172), Expect = 4e-17
 Identities = 53/172 (30%), Positives = 77/172 (44%), Gaps = 14/172 (8%)

Query: 120 HHAHYQFGSGYCVFNDLISAALHAQSLAGIVTVLIFDCDVHQGDGTAAMGQAYDNLYTCS 179
           HHA      G+C+ N++  AA HAQ+  G   +LI D D H G+GT  +  A  ++    
Sbjct: 152 HHAEPVRARGFCLLNNVAIAAAHAQAKLGCEKILIIDWDAHHGNGTQDIFWADPDVLFFD 211

Query: 180 IHCQENF-PARKQTSDLDLELSRG----------VGDEEYLEAVAQTLALAIRLYQPDLI 228
            HC   F P      ++   L  G           GD  + +   + L  A   +QPDL+
Sbjct: 212 THCAAPFYPGSGHLEEIGDGLGEGYTINVPLPETAGDVAFEKVFREILMPAADYFQPDLV 271

Query: 229 IYDAGVDVHQADRLGHLNITTEGIYQRDRLVLDNA-KAASIPIACVVGGGYS 279
           +  AG D H+ D    LN+T +G      +V   A K     +A V+ GGYS
Sbjct: 272 LVSAGFDPHRNDMA--LNLTYDGFKVITGIVQAIADKHCEGRLALVLEGGYS 321