Pairwise Alignments

Query, 300 a.a., histone deacetylase superfamily protein (RefSeq) from Shewanella loihica PV-4

Subject, 304 a.a., histone deacetylase/AcuC/AphA family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  375 bits (962), Expect = e-109
 Identities = 176/300 (58%), Positives = 226/300 (75%)

Query: 1   MVPLVYHASYSQLALPHHHRFPITKYQALYQYLLDRQIVDPTAFHSPEAVSLEWLKSIHC 60
           M+PLVYHASYS+LALP HHRFP TKY  LYQYLLD Q+  PT FH+P  ++ E +  +H 
Sbjct: 1   MIPLVYHASYSKLALPIHHRFPTTKYAHLYQYLLDNQLATPTQFHTPTPMTAEEIMQVHH 60

Query: 61  PDYVMQFIEQRLPDKAVRRLGFPLSERLTQRTLYSVGGTHLACELAVRHGVALQLSGGYH 120
            DYV QFI+  L   A+RR+GFP SE L +RTL+S+ GT L   LA++ G+AL L+GGYH
Sbjct: 61  RDYVEQFIDGTLATSALRRIGFPWSEALVERTLHSLAGTSLTAALALQTGIALHLTGGYH 120

Query: 121 HAHYQFGSGYCVFNDLISAALHAQSLAGIVTVLIFDCDVHQGDGTAAMGQAYDNLYTCSI 180
           HAHY+FGSGYC+FNDLI AA        +  +LIFDCDVHQGDGTA + Q +  + +CSI
Sbjct: 121 HAHYEFGSGYCIFNDLIIAARKLIIEQQLHKILIFDCDVHQGDGTATLSQLHQGIISCSI 180

Query: 181 HCQENFPARKQTSDLDLELSRGVGDEEYLEAVAQTLALAIRLYQPDLIIYDAGVDVHQAD 240
           HC++NFP+RKQ S  D+EL +G  D  YL+ V QTL L IRL+QPDLI+YDAGVD+HQ D
Sbjct: 181 HCKDNFPSRKQHSHYDIELVKGTDDSAYLDTVEQTLELLIRLHQPDLILYDAGVDIHQDD 240

Query: 241 RLGHLNITTEGIYQRDRLVLDNAKAASIPIACVVGGGYSKEIEVLAERHAQVFIAAHAIW 300
            LGHL I+ +G+YQRD  VL  A+AA+IP+A V+GGGYS++   L++RH+Q+FIAA+ +W
Sbjct: 241 DLGHLQISQQGLYQRDVTVLSMARAANIPVAAVIGGGYSRDALQLSQRHSQLFIAANHLW 300