Pairwise Alignments

Query, 300 a.a., histone deacetylase superfamily protein (RefSeq) from Shewanella loihica PV-4

Subject, 295 a.a., Deacetylases, including yeast histone deacetylase and acetoin utilization protein from Sphingomonas koreensis DSMZ 15582

 Score =  219 bits (558), Expect = 6e-62
 Identities = 119/294 (40%), Positives = 169/294 (57%), Gaps = 5/294 (1%)

Query: 2   VPLVYHASYSQLALPHHHRFPITKYQALYQYLLDRQIVDPTAFHSPEAVSLEWLKSIHCP 61
           +P+V+H  Y   A P   ++   K   +   L D        +H PE +   W++++H P
Sbjct: 3   IPVVHHPLYVAPA-PARSQYQWNKNGLVRDLLRDSSA--SLDWHEPEPMPRAWIEAVHDP 59

Query: 62  DYVMQFIEQRLPDKAVRRLGFPLSERLTQRTLYSVGGTHLACELAVRHGVALQLSGGYHH 121
           DYV + IE R+P +  RR+GFP++E +  R L   GGT+LA +LA RHG A   +GG HH
Sbjct: 60  DYVAEVIETRVPREKERRIGFPVTEAVALRALAVPGGTYLAAKLAQRHGFAANTAGGSHH 119

Query: 122 AHYQFGSGYCVFNDLISAALHAQSLAGIVTVLIFDCDVHQGDGTAAMGQAYDNLYTCSIH 181
           A +  G+GYCVFNDL  AA           VLI DCDVHQGDGTAA+     ++ T SIH
Sbjct: 120 ALHDTGAGYCVFNDLAIAANRLAEEGE--RVLIVDCDVHQGDGTAALMAGRGDVATYSIH 177

Query: 182 CQENFPARKQTSDLDLELSRGVGDEEYLEAVAQTLALAIRLYQPDLIIYDAGVDVHQADR 241
            ++NFP RK  S LD+ L  G  D  Y++A+  +L   +  + P LI+Y AGVD  + DR
Sbjct: 178 AEKNFPVRKARSTLDVGLPDGTDDVAYMDALTTSLPALVEDFAPTLILYQAGVDPWEGDR 237

Query: 242 LGHLNITTEGIYQRDRLVLDNAKAASIPIACVVGGGYSKEIEVLAERHAQVFIA 295
           LG L ++ EG+  RD+ V   A+A  +P+A  +GGGY  +   ++ RH    +A
Sbjct: 238 LGRLKLSREGLVVRDKWVASLARARGVPLASALGGGYGVDAMEVSARHVASILA 291