Pairwise Alignments

Query, 300 a.a., histone deacetylase superfamily protein (RefSeq) from Shewanella loihica PV-4

Subject, 335 a.a., histone deacetylase from Ralstonia sp. UNC404CL21Col

 Score =  203 bits (516), Expect = 5e-57
 Identities = 117/295 (39%), Positives = 163/295 (55%), Gaps = 6/295 (2%)

Query: 6   YHASYSQLALPHHHRFPITKYQALYQYLLDRQIVDPTAFHSPEAVSLEWLKSIHCPDYVM 65
           ++  +  L LP  HRFP+ KY  L   +L   +   T   +P A   + L   H P+YV 
Sbjct: 19  FYTDHFVLPLPPGHRFPMRKYSDLRARVL-ADVPGLTMTEAPRADD-DALLLAHTPEYVD 76

Query: 66  QFIEQRLPDKAVRRLGFPLSERLTQRTLYSVGGTHLACELAVRHGVALQLSGGYHHAHYQ 125
                RL     R +GFP S  + +R+  S G T  ACE A+  G+A+ L+GG HHA+  
Sbjct: 77  AVSAGRLHPARQREIGFPWSPEMVERSRRSAGATMAACEAALADGIAVNLAGGTHHAYAD 136

Query: 126 FGSGYCVFNDLISAALHAQSLAGIVT----VLIFDCDVHQGDGTAAMGQAYDNLYTCSIH 181
            G G+CVFND   A+   Q  AG       V I D DVHQG+GTA++ +    ++T S+H
Sbjct: 137 KGGGFCVFNDAAVASRWIQRQAGRTPADFPVAIVDLDVHQGNGTASILRDDATVFTLSLH 196

Query: 182 CQENFPARKQTSDLDLELSRGVGDEEYLEAVAQTLALAIRLYQPDLIIYDAGVDVHQADR 241
            ++N+P RK+ SDLD+ L  G GDE+YL+A+   L +    ++P LIIY AG D H+ DR
Sbjct: 197 GEKNYPFRKEASDLDIGLHDGCGDEDYLQALTGALDILAGRFKPQLIIYLAGADPHEGDR 256

Query: 242 LGHLNITTEGIYQRDRLVLDNAKAASIPIACVVGGGYSKEIEVLAERHAQVFIAA 296
           LG L +T EG+ +RD+ V D A    IP+A  + GGY   I+     HAQ    A
Sbjct: 257 LGRLKLTLEGLARRDQEVFDFAYQRRIPVAVTMAGGYGNNIDDTVAVHAQTIALA 311