Pairwise Alignments

Query, 795 a.a., DNA polymerase II (RefSeq) from Shewanella loihica PV-4

Subject, 787 a.a., DNA damage-inducible DNA polymerase II from Pseudomonas syringae pv. syringae B728a

 Score =  633 bits (1633), Expect = 0.0
 Identities = 359/806 (44%), Positives = 496/806 (61%), Gaps = 39/806 (4%)

Query: 4   KGRILTRHHQ----GSELHYYLSTAEGPARVIVPNGERICFCRTQDELRLLGDNR-ESGI 58
           +G IL+RH Q    G+E+ ++L+T +GP  + +P    + F   +   R     R E G+
Sbjct: 5   QGFILSRHWQDTPAGTEVDFWLATDQGPRHIRLPCQPSVAFIPAEQGERARSLLRTERGV 64

Query: 59  RSEALNLTTFQDEPVSALYFANNQSFRHLSRIATDKGISLYESELRAEQRYLIERYIALD 118
               L L  F+  PV  +Y   ++   ++ ++     + +YE+++R  +RYL+ER+I   
Sbjct: 65  ELRPLELCDFRHRPVLGVYCQQHRQLMNIEKLLRRGNVDVYEADIRPPERYLMERFITAP 124

Query: 119 VEFIGRWQSQALDTPTLIAERARRSELDVNREVKLAVVSLDFECAMDGELFSVGLYGQSA 178
           V+F G       D   ++ +   R   D    ++L  VSLD E    GEL+S+ L G   
Sbjct: 125 VQFGG-----TPDADGVLCDAQIRPSPDYRPNLRL--VSLDIETTARGELYSIALEGCGQ 177

Query: 179 SGEPYQQVIMVGEAC--DSPPEY-LSLVPNEAALIKSLLDWFKLNDPDIIIGWAVVTFDL 235
                +QV M+G A   D   ++ L      A L++ L DW  L+DPD IIGW V+ FDL
Sbjct: 178 -----RQVYMLGPANGGDETLDFQLDYCDTRAQLLERLNDWLALHDPDAIIGWNVIQFDL 232

Query: 236 ALLYRRARALNIPLTLGRLGTQLSWRV----DNKYRPETLILPGRVVLDGIDWLKAAFYQ 291
            +L+  A+ L +PL LGR G  + WR     +N +  E   + GR+++DGI+ L++A + 
Sbjct: 233 RVLHEHAQRLQVPLRLGRGGEAMGWREHGSRNNHFFAE---VSGRLIIDGIEALRSATWS 289

Query: 292 FDSFSLESVARELLGEGKAIHNVSHRAEEIATLFREDKAALAHYNITDCRLVWEIFAKTD 351
           F SFSLE VA+ LLGEGKAI     R +EI  +F EDK ALA YNI DC LV  IFAKT 
Sbjct: 290 FPSFSLEYVAQTLLGEGKAIDTPYQRMDEINRMFAEDKPALARYNIKDCELVSRIFAKTQ 349

Query: 352 LLAFVMERSRLTGLELGRVGASVAAFNNLYLPHLHRAGYVAPSVPVSDGIESPGGYVMDS 411
           LL F++ER+ +TGL   R G SVAAF +LY+P +HR G+VAP++       SPGG+VMDS
Sbjct: 350 LLTFLLERATVTGLPADRSGGSVAAFCHLYIPLMHRQGFVAPNLGERLPEASPGGFVMDS 409

Query: 412 KPGLYQHILVLDFKSLYPSIIRTFLIDPKGLVEGLKAEANAGVKGVREGNDTVPGFLGAQ 471
           +PGLY+ +LVLD+KSLYPSIIRTFLIDP GL+EGL+  A++         ++VPGF GA+
Sbjct: 410 QPGLYESVLVLDYKSLYPSIIRTFLIDPVGLIEGLRHPADS---------ESVPGFRGAR 460

Query: 472 FSRNSPILPELIASLSAKREEAKREANAPLSQAIKIIMNSLYGVLGSRGCVFHDARLASS 531
           FSR    LP ++  +   RE AKRE NAPLSQA+KIIMN+ YGVLGS GC F D RLASS
Sbjct: 461 FSRTRHSLPAIVERVWQGREAAKREQNAPLSQALKIIMNAFYGVLGSSGCRFFDPRLASS 520

Query: 532 ITLRGHEIMKQTKQWIEALGLTVIYGDTDSTFVHISSPERVGDINAFARELVASINEKWR 591
           ITLRGHEIM +T+  I+A G TVIYGDTDSTFV +  P    +  +  + LV  +N+ WR
Sbjct: 521 ITLRGHEIMLKTRDLIQAQGYTVIYGDTDSTFVWLGRPHGQEEAASIGKALVQQVNQWWR 580

Query: 592 LKLKQEFQLECYLELEYERHFEQFFMPTLRGSTEGSKKRYVGAYRQEDQSLKLVFKGMEQ 651
             L  E+ L   LEL+YE HF +F MPT+RG+ EGSKKRY G   + D S ++V+KG+E 
Sbjct: 581 EHLHTEYGLHSALELQYETHFRRFLMPTVRGAEEGSKKRYAGLVTRADGSEEMVYKGLET 640

Query: 652 VRSDWSPLAREVQAELYYRLFAKQDVLGYLKQIVDALQRGELDDRLIFSKRLRRNIEDYT 711
           VR+DWSPLA++ Q ELY R+F +Q    Y++  V     GELDD LI+ KRLRR ++DY 
Sbjct: 641 VRTDWSPLAQQFQQELYLRIFKRQPYQDYVRDYVQRTLSGELDDLLIYRKRLRRKLDDYQ 700

Query: 712 AKSSPHVKAATL---WCQRSGNDSHGKRGEKISYLMTQNGAEPVQHLLGKIDYQYYLDKQ 768
               PHV+AA L   +  + G     + G  ISY+MT  G EP++     IDY +Y+ +Q
Sbjct: 701 RNVPPHVRAARLADEYNDQQGRPRQYQSGGWISYVMTTAGPEPLEIRHAPIDYDHYVTRQ 760

Query: 769 IAPISDPILSILNTSFNNLVAKQMSL 794
           + P++D IL  ++  F+ L+  Q+ L
Sbjct: 761 LQPLADAILPFVDDDFSTLIGGQLGL 786