Pairwise Alignments

Query, 795 a.a., DNA polymerase II (RefSeq) from Shewanella loihica PV-4

Subject, 801 a.a., DNA polymerase II (RefSeq) from Shewanella amazonensis SB2B

 Score =  853 bits (2203), Expect = 0.0
 Identities = 454/806 (56%), Positives = 579/806 (71%), Gaps = 37/806 (4%)

Query: 3   VKGRILTRHHQ----GSELHYYLSTAEGPARVIVPNGERICFCRTQDELRLLGDNRESGI 58
           ++GR+LTR +      + L Y + T  GP +V V N   + FC + D  RLL +  E+ +
Sbjct: 20  LRGRVLTRANVQRSGDTVLEYLIKTVNGPVKVEVHNQRPMAFCHSDDVERLLVEGAETEV 79

Query: 59  RSEALNLTTFQDEPVSALYFANNQSFRHLSRIATDKGISLYESELRAEQRYLIERYIALD 118
            S  L L +F  +PV A+Y       + L   A + GI+LYE++++ EQR+LIER++ALD
Sbjct: 80  WSHPLELQSFSRQPVHAIYCRTGLMLKRLVNRAQELGIALYEADIKPEQRFLIERFVALD 139

Query: 119 VEFIGRWQSQALDTPTLIAERARRSELDVNREVKLAVVSLDFECAMDGELFSVGLYGQSA 178
            EF G + S        +A R R +    ++ + L  VSLD EC+M GEL+S+GLYG   
Sbjct: 140 AEFFGHFDSSG--PSRFVASRVRAT----SQHIPLKAVSLDIECSMSGELYSIGLYGDC- 192

Query: 179 SGEPYQQVIMVGEA-----C--DSPPEYLSL--VPNEAALIKSLLDWFKLNDPDIIIGWA 229
             EP  +VI+VGE      C  D     +++    +E AL+ SL  WF   DPDI++GWA
Sbjct: 193 --EP--KVIIVGEGETELTCHRDGVEHKVAVEWACDEVALLLSLQRWFMEVDPDILLGWA 248

Query: 230 VVTFDLALLYRRARALNIPLTLGRLGTQLSWRVDNKYRPETLILPGRVVLDGIDWLKAAF 289
           VVTFDL+LL+RRA+   + L +GR G  L+W+V++K+RPETL L GRVVLDGIDWLKAAF
Sbjct: 249 VVTFDLSLLWRRAKHHGMRLCIGRFGKPLAWKVEDKHRPETLDLSGRVVLDGIDWLKAAF 308

Query: 290 YQFDSFSLESVARELLGEGKAIHNVSHRAEEIATLFREDKAALAHYNITDCRLVWEIFAK 349
           YQFDSF+L+ VA ELLGEGKAIHN   R EEI  LFREDKAALA+YN+TDCRLVW+IF K
Sbjct: 309 YQFDSFALDRVAGELLGEGKAIHNPDDRGEEITRLFREDKAALAYYNLTDCRLVWDIFQK 368

Query: 350 TDLLAFVMERSRLTGLELGRVGASVAAFNNLYLPHLHRAGYVAPSVPVSDGIESPGGYVM 409
           TDL+ F +ER+RLTGLE GRVGAS+AAFN+LYLPHLHRAG+VAP++    G +SPGGYVM
Sbjct: 369 TDLIHFALERARLTGLEFGRVGASIAAFNHLYLPHLHRAGFVAPAMQTVPGPDSPGGYVM 428

Query: 410 DSKPGLYQHILVLDFKSLYPSIIRTFLIDPKGLVEGLKAEANAGVKGVREGNDTVPGFLG 469
           DS PGLY+++LVLD+KSLYPSIIRTFLIDPKGLV GL +E  A          +V GF G
Sbjct: 429 DSVPGLYRNVLVLDYKSLYPSIIRTFLIDPKGLVLGL-SEPEA---------MSVEGFRG 478

Query: 470 AQFSRNSPILPELIASLSAKREEAKREANAPLSQAIKIIMNSLYGVLGSRGCVFHDARLA 529
           A+FSR SPILP+L+A+L+++REEAK   N P+SQA+KIIMNSLYGVLGSRGCVFHD RLA
Sbjct: 479 ARFSRQSPILPKLVATLASRREEAKANQNGPMSQAVKIIMNSLYGVLGSRGCVFHDYRLA 538

Query: 530 SSITLRGHEIMKQTKQWIEALGLTVIYGDTDSTFVHISSPERVGDINAFARELVASINEK 589
           SSITLRGHEIM+ TK WIEA G  VIYGDTDSTFV +   +  G+  A  R LV  +N++
Sbjct: 539 SSITLRGHEIMRTTKAWIEAEGFQVIYGDTDSTFVWLG--DEAGNAKATGRALVDMVNQR 596

Query: 590 WRLKLKQEFQLECYLELEYERHFEQFFMPTLRGSTEGSKKRYVGAYRQEDQSLKLVFKGM 649
           WR +L+++  LEC+LELE+ERHFEQFFMPTLR STEGSKKRYVG Y   ++ + LVFKGM
Sbjct: 597 WREQLREDKGLECFLELEFERHFEQFFMPTLRHSTEGSKKRYVGLYDNGNEKV-LVFKGM 655

Query: 650 EQVRSDWSPLAREVQAELYYRLFAKQDVLGYLKQIVDALQRGELDDRLIFSKRLRRNIED 709
           EQVRSDWSPLAR VQ ELY RLF ++++  Y++++  +L  GELDD L+F KRL+R+I  
Sbjct: 656 EQVRSDWSPLARRVQYELYRRLFQQENLTEYVQEVEKSLYSGELDDELVFHKRLKRDISQ 715

Query: 710 YTAKSSPHVKAATLWCQRSGNDSHGKRGEKISYLMTQNGAEPVQHLLGKIDYQYYLDKQI 769
           YTAKS+PHVKAA L    +G+ + GKRG  I YL T+ GAEP+      IDY YY D+Q+
Sbjct: 716 YTAKSAPHVKAAALLVSATGDANRGKRGAAIRYLFTKAGAEPLGFQSQPIDYDYYYDRQL 775

Query: 770 APISDPILSILNTSFNNLVAKQMSLI 795
            PI +PIL++L  ++    A+Q+ LI
Sbjct: 776 LPILEPILAVLKINYQKSGAEQLLLI 801