Pairwise Alignments

Query, 876 a.a., TonB-dependent receptor (RefSeq) from Shewanella loihica PV-4

Subject, 891 a.a., hypothetical TonB-dependent receptor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  414 bits (1065), Expect = e-120
 Identities = 289/924 (31%), Positives = 447/924 (48%), Gaps = 81/924 (8%)

Query: 1   MYKNSLLANSVRFALVGGAAMTAFTAPAVFAADEQAAD--KVERIEVTGSRIKRSDLEGA 58
           M   + +A +VRF+L+  A ++   AP   AA++ A D  KVERI VTGSRI+R+D+E +
Sbjct: 1   MTTQTTVARAVRFSLL--ALVSTSIAPIAMAAEQGAVDANKVERIAVTGSRIQRTDMETS 58

Query: 59  SPVTTITADDMKVEGNFTVADALRNSNLNSFGSFSERSG--SSAQSQATINLRGAGSSRT 116
           SPVT I+  ++   G  TV+D +RN + NSFGSF E SG  S   SQ+T+++RG GS RT
Sbjct: 59  SPVTVISRAEIDASGTATVSDFVRNLSQNSFGSFREASGFGSGQSSQSTVSMRGLGSQRT 118

Query: 117 LVLIDGKRFPGSPTLGGSSANLNAIPMAAVERIEILTDGASSTYGSDAIAGVVNIIMKKN 176
           LVLIDG+R   S   GG + NLN +PMAA+ERIE+L DGAS+ YGSDA+AGV+NII KK 
Sbjct: 119 LVLIDGRRMGSSVAFGGGTQNLNVVPMAAIERIEVLRDGASAVYGSDAVAGVINIITKKE 178

Query: 177 FQGIEFNVGGGSRDRDGGLTSKEFSVVAGYEMDKGNITFAFDHQDRKGIADGDRAFSAPW 236
           F+G+EF+   G+  + GG          G   +K N+  + ++ +R  + D DR +S   
Sbjct: 179 FEGVEFDADLGA-TQHGGAEKSNARFTFGVNSEKTNMVASVEYYNRAALYDADRDYS--- 234

Query: 237 MRDLNGDGEIQAYSETDGWSIYGATI-ASPDFSEAQASPLCDDLAAQYGDNVFKTVKADD 295
                            GW   G+ +  +    +A   P        + D       +  
Sbjct: 235 ----------DTLYSAHGWPGTGSYVDKTKPILDADGKPTGKYQTVSFADKRCGEGNSLV 284

Query: 296 DWGPGSTYCMYAYGNVSYNKASVDRNTVYVDANYEIAEDVEWFGRIMFTQNNSFGRYA-- 353
               G+  C Y     S   A+ +R + +V  ++E+ ED+ W  R+M ++  + G+YA  
Sbjct: 285 TGPDGNQTCSYNAAAESATMAAQERFSTFVKVDHELTEDINWTNRLMMSRVWTEGQYAAA 344

Query: 354 ----PPAAAW---------------------NNMSADNPHNPYGEETRGY-FRWVGIGTR 387
                P   W                     N +  D   N  G +T     R   +G R
Sbjct: 345 PNSYSPKLRWTKENSDIYLATVNKYGNDYLKNQLKYDAKGNLIGGDTINLKMRTTPLGPR 404

Query: 388 DGNVDDYNQDYLTGLRGSISAWNDATWEFYYHYNKAD---------NKSIGEYYLSYSGL 438
             NV+D + ++LT L G         W     + ++D         N ++ + +L    L
Sbjct: 405 VTNVEDTDINFLTALEGHSDILGGTAWNLGAQWIRSDVTTIQTGLANANMIQEFLDNGKL 464

Query: 439 AYNEANG--IDLGSEAGVNNMKATTLTQDRATFHQYNAGIGFDAFELPGGAVAHYFGLEY 496
            Y  A    ++  +E  +     T +   R   +  + G  FD FELP G V    G E+
Sbjct: 465 DYFAAGTGYVEGSNELQLQEAAHTGIFTGRVQTYGIDGGASFDLFELPAGTVPLAIGFEF 524

Query: 497 FEQDFASIYDAQSEAGLIGGSAG--NSAGGDRQVWAAFYEAAMPLTDTIELNIAARYDDY 554
              ++    DA S  G I G++G  N  G  R+V +   E   P+ D ++L ++AR+DDY
Sbjct: 525 MRTEYDKTNDAGSNLGNIIGTSGGDNIQGKSREVLSFSAETMFPIIDGLDLELSARFDDY 584

Query: 555 SDFGNNVAPKASVRWQALDNLVLRASYSEAFRAPALDQLYAATTFSADDGTDYPYCVSNG 614
           SDFG+   PK  + ++ +D+L++RASY   FRAP  D LYA  + +     D+  C  N 
Sbjct: 585 SDFGSTFNPKVGLSYRPVDSLLVRASYGTGFRAPTFDDLYATASETYLWARDWTQCPGNP 644

Query: 615 IADCPEKQYDTYIRANKDLGPETSEYINLGLAWDIVDNFGIKVDYFDLKIDDVISRRSIT 674
              C ++Q+    + N DL PE S  ++LGL W++ D    ++ Y+D++ID+VIS  S  
Sbjct: 645 -NGCVQEQFKAQYQGNDDLEPEESTSLSLGLVWNVTDALDFELSYYDIQIDNVISTMSTQ 703

Query: 675 NVMRGIASGNLAPSDTFYVVRAPGEAGKLGKALEVGTGYGNSDKLQIKGIDVGLNGNFET 734
           +V+     G     D   V+      GK+   +      G   +L+  GID  +    ET
Sbjct: 704 DVLNQERDG----FDMSNVLFRDPVTGKIDYVVLQKMNLG---ELKTSGIDFNIRYLLET 756

Query: 735 DFGDFGIAWTNSFVLEYVEEVEGGSGAIDTAGWSGQPEYKSVFTTTYTMGDHRVSWNMNY 794
             G+F      ++VL +  +    S   D  G  GQP++++  +TT+T G+   S    Y
Sbjct: 757 SVGEFRFGAETNYVLSWESKDGPYSELEDIIGDVGQPQFRANLSTTWTQGEWEASLFARY 816

Query: 795 TDSTYESSKSVGDTIVPEGSLDSWLIHNISYTYDAGSFGAIMLGVNNLTDEDPVLSSDGK 854
           TDS  +  +  G T   +  LD+   +N+ +         + +G+ NL DE+P ++ +  
Sbjct: 817 TDS--QEDEDYGKT-PSQWLLDAQAGYNLPWN------AKVNVGIRNLLDEEPAMNENLG 867

Query: 855 FENAD--LYNNYGREYRASYTLKF 876
           F   D  LY+  GREY   Y  KF
Sbjct: 868 FPGYDTYLYDPIGREYYVRYNQKF 891