Pairwise Alignments

Query, 876 a.a., TonB-dependent receptor (RefSeq) from Shewanella loihica PV-4

Subject, 1060 a.a., TonB dependent receptor/Secretin and TonB N terminus short domain/TonB-dependent Receptor Plug Domain from Sphingomonas koreensis DSMZ 15582

 Score =  157 bits (398), Expect = 2e-42
 Identities = 204/879 (23%), Positives = 347/879 (39%), Gaps = 122/879 (13%)

Query: 26  APAVFAADEQAADKVERIEVTGSRIKRSDL-EGASPVTTITADDMKVEGNFTVADALRN- 83
           AP   A+DEQ  D    + VTGSRI R  + + A P+  I  +D++  G   +++ L + 
Sbjct: 115 APRPAASDEQ--DDAGDVIVTGSRIARQVVTDSAVPIVQINEEDIQSSGATELSEVLADY 172

Query: 84  -SNLNSFGSFSERSGSSAQSQATINLRGAGSSRTLVLIDGKRFPGSPTLGGSSANLNAIP 142
            +   S    +  S  +A   ++++LRG G+ RTL LIDG+R   S  +  S+ +L++IP
Sbjct: 173 PAVTPSLNLANSNSQINAAGTSSVSLRGLGADRTLTLIDGRRTV-SNRITSSAVSLSSIP 231

Query: 143 MAAVERIEILTDGASSTYGSDAIAGVVNIIMKKNFQGIEFNVGGGSRDRDGGLTSKEFSV 202
              VER+E++T GAS+ YGSDAIAGVVNII ++ + GI    G      +G        +
Sbjct: 232 AMFVERVEVITGGASAVYGSDAIAGVVNIITRRKYDGIRVG-GRAGISSEGDSQRLNLDL 290

Query: 203 VAGYEM--DKGNITFAFDHQDRKGIADGDRAFSAPWMRDLNGDGEIQAYS-ETDGWSIYG 259
           + G ++  D+ ++     ++   G+    RA +           +  AYS   D   +  
Sbjct: 291 LVGQKLFDDRVSLVLGASYEKEDGVMGYQRARAL----------DSVAYSLSADSNPLNQ 340

Query: 260 ATIASPDFSEAQASPLCDDLAAQYGDNVFKTVKADDDWGPGSTYCMYAYGNVSYNKASVD 319
             +     S++ ++P    L++      +    A+      ++  +Y +      + S  
Sbjct: 341 GELGITRPSKSSSTPGGRFLSSSTAGGGYFVYDANGTLFRSTSTAVYGWETRPDLQISAP 400

Query: 320 RNTVYVDA---NYEIAEDVEWFGRIMFTQ-NNSFGRYAPPAAAWN-------------NM 362
           R T Y+ A     ++  D+E+FG++ +++   S  R     AA++              +
Sbjct: 401 R-TSYLAAGKITVDLGSDIEFFGQVQYSKVKTSAERGGAETAAYDEEFGDPLAPDVVGRI 459

Query: 363 SADNPHNPYGEETRGYFRWVGIGTRDGNVDDY-------NQDYLTGLRGSI-SAWNDATW 414
           + +NP+ P           +    R   +  Y            TGLRG +   WN   W
Sbjct: 460 ARNNPYVPTAIRAAASSSGIQWSRRFNELGHYRILNDRETWRAWTGLRGKVGERWN---W 516

Query: 415 EFYYHYNKADNKSIGEYYLSYSGLAY--------------NEANGIDLGSEAG----VNN 456
           E  Y Y +   +      L+   L Y              +    +D  + A     VN 
Sbjct: 517 EISYGYGRFHQEQNRVNLLNLQNLKYAINAEFDPAAPGDLSRVRCVDAAARAAGCVPVNL 576

Query: 457 MKATTLTQDRATF----------HQYNAGIGF---DAFELPGGAVAHYFGLEYFEQDFAS 503
               ++T   A +           Q +   GF     FELP G V+   G EY      S
Sbjct: 577 FGPNSITSAAANYIRADLKLDGLMQQDVVQGFLSGALFELPAGPVSIALGGEYRRDWQRS 636

Query: 504 IYDAQSEAGLIGGSAGNSAGGDRQVWAAFYEAAMPL------TDTIELNIAARYDDYS-- 555
           + D  +  G    S      GD +   AF E  +P+        ++ L+ A RY DY+  
Sbjct: 637 VTDDTTRRGFGSASFIAEYEGDIKAKEAFAEVKVPVFREQPFAHSLSLDAAVRYGDYNIK 696

Query: 556 DFGNNVAPKASVRWQALDNLVLRASYSEAFRAPALDQLYAATTFSADD------------ 603
           + G+ ++ +    W  + ++  R  Y+ A RAP +  LY+     +D             
Sbjct: 697 NVGSVLSYRFGGEWAPVRDIRFRGQYARAQRAPTVTNLYSPARDDSDSVVDLCSGVTATT 756

Query: 604 -GTDYPYC----------VSNGIADCPEKQYDTYIRANKDLGPETSEYINLG--LAWDIV 650
            GT    C           +NG+        +     N DL  ET++ ++ G  L    +
Sbjct: 757 TGTIATNCRSIAGVAAEIAANGVFLQDTTSIEGPAAGNPDLKEETADTLSFGAVLTPRFI 816

Query: 651 DNFGIKVDYFDLKIDDVISRRSITNVMRGIASGNLAPSDTFYVVRAPGEAGKLGKALEVG 710
               + VDYF +KI DVIS     +++R         ++ F+       A   G+   + 
Sbjct: 817 PGLSMTVDYFRIKIRDVISSLDAVDLLRECLGNPGGITNNFFCNEITRNAE--GQITRII 874

Query: 711 TGYGNSDKLQIKGIDVGLNGNFE-----TDFGDFGIAWTNSFVLEYVEEVEGGSGA--ID 763
               N  +    G DV ++  F+     +  G F I +  S + +Y    +G  G    D
Sbjct: 875 NRDLNLTQTVRSGADVAIDYRFDAPQWLSSKGKFDIRFLYSRLFDYYTVFDGVDGVRRTD 934

Query: 764 TAGWSGQPEYKSVFTTTYTMGDHRVSWNMNYTDSTYESS 802
             G  G           Y  G  R+ W + YT    +S+
Sbjct: 935 YKGEIGAWVNSGQAQLGYRDGGLRLRWKLRYTGDAVDSN 973