Pairwise Alignments

Query, 380 a.a., nuclease SbcCD, D subunit (RefSeq) from Shewanella loihica PV-4

Subject, 414 a.a., Exodeoxyribonuclease I subunit D from Pseudomonas syringae pv. syringae B728a

 Score =  125 bits (315), Expect = 2e-33
 Identities = 110/328 (33%), Positives = 155/328 (47%), Gaps = 38/328 (11%)

Query: 1   MKFIHTSDWHIGRQLHNQSLLDDQRHVLDQIVSLAKTHEVDALIVAGDIYDRSVPPANAV 60
           M+  HTSDWH+G+ LH Q    +    L  +++     + D L++AGDI+D   PP  A 
Sbjct: 1   MRLFHTSDWHLGQNLHGQERDFEHACFLTWLLARLADRKPDVLLIAGDIFDTVNPPVKA- 59

Query: 61  ALLDEVLNEFIALG------IDVIMIAGNHDGHERLGFAARQMQASGLHIIGPL------ 108
               E L +FI         + ++MIAGNHD   R+   A  M+    H +G +      
Sbjct: 60  ---QERLYDFIVNAHEQQPLLTIVMIAGNHDSGSRIELPAPLMRRLRTHALGRVMWLDDG 116

Query: 109 ----APKVSPIRLSSGSGDAIFYPLPYAEPATVR-QQLECEASSHEEAMVELLKQVQDHD 163
                  + P+  ++G   A    LP+  PA V    L  +       + ELL    D  
Sbjct: 117 VLDAERLLLPLPDANGDIKAWCLALPFLRPAEVTGPTLGDDYLRGIGRVHELLIAAADLK 176

Query: 164 SQ-GLPKVVIGHCFLDGGSES-DSERPLSIGGADKISPKHFAP-FDYTALGHLHGPQ-YK 219
            Q G   + I H  + GGS S DSER L IG A+ +    F P   Y ALGHLH PQ   
Sbjct: 177 RQPGQALIAISHAHMAGGSVSEDSERSLIIGNAEALPASLFGPSITYVALGHLHKPQRVN 236

Query: 220 GAEQVRYSGSILKYSFSE---QHQ-------NKSVTLVE-LNAGSPANMTLLPLSPLRDV 268
           G E++RYSGS +  SFSE   QHQ        +++T VE L      N+  L  +PL D+
Sbjct: 237 GEERIRYSGSPIPLSFSEISYQHQILEINCDGETLTSVEPLLIPRAVNLQRLGPAPLADL 296

Query: 269 RIIEGALADLLQQGVKDPGREDYLMVRL 296
            +   AL D+    + DP R+ +L VR+
Sbjct: 297 LVQLKALPDI--DLLADPDRQPWLEVRV 322