Pairwise Alignments

Query, 380 a.a., nuclease SbcCD, D subunit (RefSeq) from Shewanella loihica PV-4

Subject, 412 a.a., exonuclease SbcCD subunit D C-terminal domain-containing protein from Pseudomonas sp. BP01

 Score =  129 bits (325), Expect = 1e-34
 Identities = 106/331 (32%), Positives = 156/331 (47%), Gaps = 42/331 (12%)

Query: 1   MKFIHTSDWHIGRQLHNQSLLDDQRHVLDQIVSLAKTHEVDALIVAGDIYDRSVPPANAV 60
           M+  HTSDWH+G+ LH Q    +    LD ++   +  + DAL++AGDI+D   PP  A 
Sbjct: 1   MRLFHTSDWHLGQSLHGQERDFEHACFLDWLLGQLRLRQPDALLIAGDIFDTVNPPVKA- 59

Query: 61  ALLDEVLNEFIALG------IDVIMIAGNHDGHERLGFAARQMQASGLHII--------G 106
               E L +FI         +D++MIAGNHD   R+   A  M+    H +        G
Sbjct: 60  ---QERLYDFIVQAHEQQPKLDIVMIAGNHDSGSRIELPAALMRRLRTHALGRVHWLDEG 116

Query: 107 PLAPKVSPIRLSSGSGDAIFY--PLPYAEPATVR------QQLECEASSHEEAMVELLKQ 158
            L  +   I L++G G    +   LP+  PA V         L+     H+    +L+  
Sbjct: 117 QLDAERLLIPLTNGRGKVAAWCLALPFLRPAEVTGPNLGDDYLQGITQVHQ----QLIAA 172

Query: 159 VQDHDSQGLPKVVIGHCFLDGGSES-DSERPLSIGGADKISPKHF-APFDYTALGHLHGP 216
            Q    +    + I H  + GGS S DSER L IG A+ +  K F     Y ALGHLH P
Sbjct: 173 AQKKRKKDQALIAISHAHMAGGSVSEDSERSLIIGNAEALPAKLFDKAISYVALGHLHKP 232

Query: 217 Q-YKGAEQVRYSGSILKYSFSEQHQNKSVTLVELNAGSPANMTLLPL-SPLRDVRIIEGA 274
           Q     E++RYSGS +  SF+E +    V  VEL+     ++   P+   +   R+    
Sbjct: 233 QKVNREERIRYSGSPIPLSFAEINYPHQVLEVELDGTDLVSVEPRPVPRAVALQRVGPAP 292

Query: 275 LADLLQQ--------GVKDPGREDYLMVRLL 297
           L +LLQQ         ++DP R+ +L VR++
Sbjct: 293 LGELLQQLADLPVIDLLEDPNRQPWLEVRVI 323