Pairwise Alignments

Query, 460 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

Subject, 448 a.a., ATP-dependent RNA helicase SrmB from Pseudomonas fluorescens FW300-N2E2

 Score =  297 bits (760), Expect = 5e-85
 Identities = 180/447 (40%), Positives = 264/447 (59%), Gaps = 14/447 (3%)

Query: 16  FSDFSLDKRLLTSLEHMGIDTPTEIQTQSIPVGLSGRDLMASSKTGSGKTLAFLLPAMQR 75
           FS F+L +RLL ++  +    PT +Q  +IP+ L GRDL  +++TGSGKT AF+LP + R
Sbjct: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 76  VIATKALSKRDPRVLILLPTRELATQVYSQLRLLVANTQYKAIKILGGENFNDQAKALAR 135
           +I   A  +   + LILLPTRELA Q   ++      T  K+  I GGE+F  QA  L +
Sbjct: 62  LIGP-AKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK 120

Query: 136 DPHFVVATPGRLADHLAQRHLYLNGLELLILDEADRMLDLGFAEQL-RAINQAADHKRRQ 194
            P  ++ TPGR+ + L   +L L  +E+L+LDEADRMLD+GFAE + R +++  +  R+Q
Sbjct: 121 VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECVN--RQQ 178

Query: 195 TLMFSATLDHGQINEIAAELLKEPEHVAIGASHVENQDIAQKIYLCDNLSHKEQLLTRLL 254
           T++FSAT     + E+ A++L  PEH+ + A    N    Q+I   D+  HKEQ++  LL
Sbjct: 179 TMLFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQHKEQIVNWLL 238

Query: 255 QLEPHKQVIIFTATRGDTDRLAGVLAEQGFSTSSLSGELKQAARNQIMDQFSRGQQQILV 314
             E +++ I+FT TR   DR+ G L  Q +    L GE  Q  R   +D+  +G  +ILV
Sbjct: 239 ANETYEKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILV 298

Query: 315 TTDVASRGLDLLNVSLVINFDMPKFAEEYIHRIGRTGRAGAKGDAISLVGPKDWVNFKQV 374
            TDVA+RGLD+  + +VINFDMP+  +EY+HRIGRTGRAG  G AISL+   DW     +
Sbjct: 299 ATDVAARGLDVEGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSI 358

Query: 375 QNFLRKSFEFSELEELAPKFKGLKDKPSQEKRLGKQQAKPKAKTAKAASSTK-PTKPR-- 431
           + +L++SFE   ++E+   + G K   +  K +G ++ K  AK  K  +  K PTK +  
Sbjct: 359 ERYLKQSFERRTIKEVKGTYGGPKKVKASGKAVGVKKKKVDAKGDKKKTGAKAPTKRKTA 418

Query: 432 -----DKRFITGVDVGDAPM-LRKPKA 452
                D   +   D G AP+  RKP+A
Sbjct: 419 NRPKADAPSLVSKD-GMAPLKRRKPEA 444