Pairwise Alignments

Query, 338 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

Subject, 334 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  266 bits (680), Expect = 5e-76
 Identities = 144/322 (44%), Positives = 198/322 (61%)

Query: 8   SIGILLSLVSLVSGASELPTMTVAKHSQPQWITLDAQLEAVKSATVSAQTSGRIIKINYD 67
           SI ++L+  +           TV      Q + LD  ++ V   +++AQTSGR++ +  D
Sbjct: 7   SIALVLASSAYAQNQDSNERFTVKTELISQIVELDGVVQPVNQGSLAAQTSGRVVGLYVD 66

Query: 68  VNDIVPQGASLLEITSKAQGAELAAAEADFARAQAQNEEAQKQRKRYEQLFPQGAISQGD 127
           VND V +   LLEI++  Q A L AA+A  A A AQN EAQ Q  RY QLFP+GAIS+  
Sbjct: 67  VNDFVKKDQVLLEISAVQQSAALDAAQAQLASATAQNREAQAQLNRYRQLFPKGAISKDQ 126

Query: 128 MDQAIANARASAQAVSAARARIIQANESLQYTTVSAPFAGVVTKRHVEVGETVSPGQALL 187
           MD A A AR++  AV +A+A + QA ESL YT ++AP+ G+VT+R VE+GETV+PG  LL
Sbjct: 127 MDSAEARARSADAAVKSAQAAVEQAKESLGYTNITAPYDGIVTQRMVELGETVAPGTPLL 186

Query: 188 SGFATEHMRAVTHVPLRYIDALRANPKMKLVLTNGKELESDALTIFSFADAKSHSYKTRI 247
            GF+ + +R  T +P RY   +    +  +    G++L+    ++FS+AD +SH++KTR+
Sbjct: 187 RGFSLDELRVETEIPQRYQPYVADVSQFTVRTAQGEQLKPVEFSLFSYADPQSHTFKTRL 246

Query: 248 DLPPQEPNLMPGMWVKASFNAGDRNTLTIPESAVIYNNELSAVYLMQNNQFMLNQVRLGN 307
           +LP     L+PGMWVK  FN G R  L +P SAV+   ELSAVY + N Q  LN VRLG 
Sbjct: 247 ELPQNSAALVPGMWVKTEFNYGQREVLVVPSSAVLRRAELSAVYRVNNGQRALNPVRLGQ 306

Query: 308 KQGDSFEVLSGLSDGDTIAVDA 329
             GD  EVLSGL  GD +A  A
Sbjct: 307 VYGDYVEVLSGLELGDVVATQA 328