Pairwise Alignments

Query, 693 a.a., TPR repeat-containing protein (RefSeq) from Shewanella loihica PV-4

Subject, 679 a.a., TPR domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  675 bits (1741), Expect = 0.0
 Identities = 361/704 (51%), Positives = 464/704 (65%), Gaps = 39/704 (5%)

Query: 2   IHFLRPEWLLALIPLALLLWLRKRQRHQASSWNRYIAPHLAKVLVSGQASNKKQHLGLIA 61
           +HF+RPEWLLAL+PL ++LW+  RQ    S+WNRYIAPHLAKVLV+  +   ++ L ++A
Sbjct: 3   LHFIRPEWLLALLPLVIILWMLWRQHATNSAWNRYIAPHLAKVLVTEGSQKSRRPLHILA 62

Query: 62  FIWLVSVLALSGPALTKQQLPVFEANLGRVIVMDMSLSMYATDLAPNRLTQAKFKATDLI 121
           F W ++ LAL+GPAL KQ LPVF A  GRV+VMDMS+SM+ATDLAPNRLTQAKF+ATDL+
Sbjct: 63  FSWFIATLALAGPALNKQSLPVFAAEQGRVLVMDMSVSMFATDLAPNRLTQAKFRATDLL 122

Query: 122 KSLKEGETGLVAYAGDAFTISPLTRDKSTLLNLLPTLSPEIMPVLGSNLPAALDQAKQLL 181
           +SLKEGETGL+A+AGDAFTISPLTRD  TLLNLLPTLSPEIMPVLGSNL AAL QAK LL
Sbjct: 123 RSLKEGETGLIAFAGDAFTISPLTRDTGTLLNLLPTLSPEIMPVLGSNLAAALTQAKNLL 182

Query: 182 VQGGHLKGEIILLADGVNPDQIGEAKSILDDTQYRLSIIAMGTNQGAAIRLPDGQLMRDQ 241
            QGGHL+G+II++ DG+ P Q  EA S+L  +QYRL+I+  G+NQGA IRLPDGQL RD 
Sbjct: 183 AQGGHLRGDIIVMTDGITPRQFDEANSVLTGSQYRLAIMGFGSNQGAPIRLPDGQLQRDS 242

Query: 242 SDQVVVSQTDLSQLNSLIGNSGGKLFAYRADGKDLESLTQSLSQESDAKTSDRQGEAWQD 301
           S++V V++TD   L  L  N  G +   RADG+DL  L   LS   DAK +D  GE WQD
Sbjct: 243 SNEVAVAKTDFGLLQKLADNHNGIMIPNRADGEDLVQLQHWLSDSGDAKATDLDGETWQD 302

Query: 302 LGPYLALLLLLPALLSFRHAFAA------LACLVILAPSPEAQAASWQHPFSTDDQRAMQ 355
           LGPYLAL LL+PALLSFR    A       A L++ A    A A +W   + T +Q+AMQ
Sbjct: 303 LGPYLALFLLIPALLSFRQGMLASWMLMGFASLLLGALPQNAHANAWNSLWHTQEQQAMQ 362

Query: 356 AYQAQDFQGAAEQFTSPQWKAASLYKNGDYQEALKLFEQDDSASGLFNQGNSLMQLNDLD 415
           AYQA+D+  AA++F +PQW+ A+ YK G++++ALK FEQD+SA+GL+NQGN+LMQ+   D
Sbjct: 363 AYQAEDYASAAQKFETPQWQGAAQYKAGNFEQALKSFEQDNSANGLYNQGNALMQMGKPD 422

Query: 416 KAIERYQQALKKDPQLTQAEQNLELAEQLKQQQQASQDQGQSDQKKSEQNQSDQDQSNQD 475
           KA ERYQ AL K P   QA+ NLELAE+L +QQQ+ Q+    D    + +Q DQ+Q  QD
Sbjct: 423 KAKERYQAALDKQPDFPQAKANLELAEKLLEQQQSQQNANNQD----KPSQGDQNQQGQD 478

Query: 476 SNKQDKSQQDGAGQNQGQQQGQGDQQSGQGSRGQQSQGQNGQQEDEQGSNQQGSDKQGSD 535
            N           Q QGQ Q QG Q+  Q S    SQ Q   ++  Q +     DK    
Sbjct: 479 QN----------DQQQGQNQQQGQQKEQQSSPNDPSQEQQAGEKQTQDNTSSAKDK---- 524

Query: 536 KQSASQESPEQETPEQQASAEQEASQDGQSQNQQTGAANDAQMSADPAKDAKNQMDANAN 595
                Q++PEQE  +QQ +++  A QD  + NQQ      +Q      ++A+N   A ++
Sbjct: 525 -----QDNPEQEAQDQQQASDDAAKQDANAGNQQ----QQSQQQEASEQNAQNNPTAESS 575

Query: 596 QSDAGQQMGQGQQPQD------EQESTQAQAANMTQGKPGEGDEQGEPVAAATNAIAPED 649
           +  + +   Q +   D      EQ+   AQ A+  +  P E D Q    +        + 
Sbjct: 576 EPASNESKMQAKVEDDKSKAKQEQQQAVAQHADKEKQSPTEKDPQAAVESLEPPPSNSDP 635

Query: 650 LPPEMQRALTGVIDDPQVLLRNKMQLEYQKRRRQGATIKDNQQW 693
           LP +MQRAL GV +DPQVLLRNKMQLEYQKRR+ G   +DN+QW
Sbjct: 636 LPADMQRALRGVSEDPQVLLRNKMQLEYQKRRQNGQISRDNEQW 679