Pairwise Alignments

Query, 706 a.a., multifunctional fatty acid oxidation complex subunit alpha (RefSeq) from Shewanella loihica PV-4

Subject, 708 a.a., fatty acid oxidation complex subunit alpha FadJ from Vibrio cholerae E7946 ATCC 55056

 Score =  773 bits (1995), Expect = 0.0
 Identities = 407/706 (57%), Positives = 513/706 (72%), Gaps = 4/706 (0%)

Query: 2   DKSFTLNRLDNGIAVLTMDVPGETMNTLRAEFGPEICEMLAEIKADAG-IRGVVIISGKK 60
           + +F L+  +   A L +DVPGE MNTL+A F  E+  + A +    G I+G++I S K 
Sbjct: 4   NNAFQLSFDEQHYAWLAIDVPGEKMNTLQAAFAEEMQAVFATLNEKRGQIKGLIIHSLKP 63

Query: 61  DSFVAGADISMLDACATAEDARELSKQGHEVFFALESLSIPVVAAINGACLGGGLELALA 120
           D+F+AGAD+ ML+AC +  +A+ L+ QG ++F  L  L  PVVAAI+G CLGGGLELALA
Sbjct: 64  DNFIAGADVRMLEACQSVHEAQALASQGQQMFQQLADLPFPVVAAIHGPCLGGGLELALA 123

Query: 121 CHQRVCTDSNKTMLGLPEVQLGLLPGGGGTQRLPRLVGIAKSLDMMLTGKQLRAKQALKM 180
           C  RVCT+   T LGLPEV LGLLPG GGTQRLPRL+G+  +LD++LTGKQLRAK+A K+
Sbjct: 124 CDYRVCTEDEVTRLGLPEVMLGLLPGSGGTQRLPRLIGLLPALDLILTGKQLRAKKAKKL 183

Query: 181 GLVDDVVPESILLQTAIEMALA-GARPAKKPKLSTVEKLLEGTPVGRNIIFEQALKQVNK 239
           G+VD  VP S+LL  A  +    G +   +  L   EKLL  T +GR +IF+QA K+  +
Sbjct: 184 GVVDACVPHSVLLDVAKRLLEEKGHKKRAQVTLPIKEKLLANTDLGRKLIFDQAAKKTQQ 243

Query: 240 KTQGNYPAPEKIIDCVRQGVTKGIVKGLEVEAQHFGDLVVSNESEALRSIFFATTEMKKE 299
           KT+GNYPA + I++ ++ G+ KG+  GLE EA+ F +LV++ ES+ALRSIFFATTEMKK+
Sbjct: 244 KTRGNYPAAQAILEVIQYGLEKGMHAGLEYEAKRFAELVMTRESKALRSIFFATTEMKKD 303

Query: 300 SGAGDVSPKAVNKVMVLGGGLMGGGIASVTTTKAKIPVRVKDISEIGLSNALAYAYKLLA 359
            GA D  P  V  V VLGGGLMG GI+ VT  KAK  VR+KD++  G+ NAL Y YKL  
Sbjct: 304 LGA-DAKPAPVAAVGVLGGGLMGAGISHVTVAKAKTSVRIKDVANDGVLNALNYNYKLFD 362

Query: 360 KGVKRRHMTPAVRDNLMALMTTTTEYKGIKDADMVVEAVFEDLNLKHQMVKDVERECGEH 419
           K  +R+ +T A     M+ ++  T + G    D+V+EAVFEDL LK QMV D+E      
Sbjct: 363 KQRQRKILTKAQLQAQMSQLSGGTGFVGFDRCDVVIEAVFEDLKLKQQMVADIEANAKPT 422

Query: 420 TIFASNTSSLPIKQIAEAAERPENVIGLHYFSPVEKMPLVEVIAHDKTSPQTIATTVAFA 479
           TIFA+NTSSLPI QIA  A+RP+N++GLHYFSPVEKMPLVEVI H  TS +TIAT V  A
Sbjct: 423 TIFATNTSSLPIHQIASQAQRPQNIVGLHYFSPVEKMPLVEVIPHATTSDETIATVVTLA 482

Query: 480 RKQGKTPIVVKDGAGFYVNRILALYMNEAANLLLEGQSVDHLDKALVKFGFPVGPMTLLD 539
           RKQGKTPIVVKD AGFYVNRILA YMNEAA +L+ G+ ++ LD AL+ FGFPVGP+TLLD
Sbjct: 483 RKQGKTPIVVKDCAGFYVNRILAPYMNEAAQVLMAGEPIEKLDAALLDFGFPVGPITLLD 542

Query: 540 EVGIDVGAKISPILEKELGERFKAPAAFDKLLADDRKGRKNGKGFYQYGAKSKKKLVDES 599
           EVG+D+GAKI PIL KELG RF+ P  FD LL D+RKGRK+GKGFY Y   SKKK VD+S
Sbjct: 543 EVGVDIGAKIMPILVKELGPRFQGPDVFDVLLKDNRKGRKSGKGFYTYKG-SKKKEVDKS 601

Query: 600 VYGVLGLTPGADGEPIALAERCVVQMLNEAVRCLEEGIIASPRDGDIGAIFGIGFPPFLG 659
           VY +L LTP +      +A RC++ MLNEAVRCL+EGII S RDGD+GAIFGIGFPPFLG
Sbjct: 602 VYKLLKLTPESKLNDKEIAMRCLLPMLNEAVRCLDEGIIRSARDGDMGAIFGIGFPPFLG 661

Query: 660 GPFRYMDSLGAKHLVETLKRYQDQFGDRFAPCDRLVEMAESGSKFY 705
           GPFRYMD+LG   +VE + ++ +++G+RFAPCD L+  A  G KFY
Sbjct: 662 GPFRYMDTLGLTKVVEMMNQHTEKYGERFAPCDGLLTRAGLGEKFY 707