Pairwise Alignments

Query, 686 a.a., FAD dependent oxidoreductase (RefSeq) from Shewanella loihica PV-4

Subject, 643 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  486 bits (1252), Expect = e-141
 Identities = 280/588 (47%), Positives = 362/588 (61%), Gaps = 37/588 (6%)

Query: 116 ARVSGSHRLKLVNARLIIDIHLGDPLTQLKDLVSPSLASQAIQGWLANTQATDEA---LI 172
           AR+ G  RL   + R+ +D+  GD  T L +   P   +  IQ WL       +    ++
Sbjct: 76  ARIIGCQRLIFDDGRISLDLDFGDLQTMLVN--QPHCGTYPIQQWLILPHLAPQLSRKIL 133

Query: 173 WQMARLSQDNAEFLLLENNDVNLDKTSNNANTNLLTQLIIKAGFTCYRLNLSLKDDQLVT 232
           WQMARLS D+A F+ +E  +     T N A T   + L I A   C         +Q+ +
Sbjct: 134 WQMARLSADDAHFIGVELAET----TQNLAKTCGFSPLTITADMLC--------GEQIDS 181

Query: 233 LAEKPSLASLEIAMVERRALRRQQLDKFAFNPLTQ---GREGETAIIGGGVASANLALSL 289
           +A +  + + +I + ER+ LR+Q  +  AF P        +   AIIGGG+ASA+L LSL
Sbjct: 182 IASQ--IVTDDILLHERKLLRQQANNHQAFTPRPSQVASTKQPIAIIGGGLASAHLMLSL 239

Query: 290 AERGKKVSFFCMDKAPGEQASGNKQGAIYPLLTPEHGSLSHYFLLGYLFSRQRIKQL--- 346
           AER +    FC D   G+ ASGN+QGAIYPLLTPE+  LS +F   +LFSR+RI  L   
Sbjct: 240 AEREQSSILFCKDNDLGQGASGNRQGAIYPLLTPENDELSRFFQQAFLFSRRRIAALSLA 299

Query: 347 ------LESG-HEIPHDFCGVLQTGHDERSHKRLTKIINAQPWAESIARPVDALQATALA 399
                 + SG   I HDFCGVLQTGHDERS +RL KII +Q W   IA  VDA +A  +A
Sbjct: 300 SMKGSDVASGVMPISHDFCGVLQTGHDERSQQRLDKIIQSQDWPAEIAYAVDASEANKIA 359

Query: 400 GVTIEHQGIYYPLAGWVSPQAFTRAAISQAERLGKQTSHYQCQITAIRFENQQWYLSAIQ 459
            + I+  G YYPL GWV P  + +AA+ +A +L     H+  +IT I  + + WYL +  
Sbjct: 360 KIGIDKAGFYYPLGGWVCPFEYAKAAVDKASQLANVQCHFNTEITEIERDAKGWYLLS-- 417

Query: 460 DGQKVEFGPYANLVLANGRHLTDFAQTDHLPISGFRGQVSHIPERAPLKDLKTVLCAHGY 519
             Q   FGP+  LVLANG  LT F+ ++ L IS FRGQVSHIP +  L  L TVLCA+GY
Sbjct: 418 --QDQRFGPFRQLVLANGAQLTQFSASERLQISPFRGQVSHIPSQFQLSQLATVLCANGY 475

Query: 520 LTPAHDKLHCTGASYVKDASNLDYSAVEQVENLDKIRTSYGGE-WTKAVDITGHSARVGV 578
           LTP+H  LHC GASYVK A +LD+  +EQ+ENL K++ SY  + W + +DI+ +SARVGV
Sbjct: 476 LTPSHQGLHCLGASYVKAAEHLDFCPLEQLENLGKMQQSYPNQDWVEDIDISANSARVGV 535

Query: 579 RMVTRDHAPMMGCAPDFEAISATYISHQQTKKSTKESAKCWQTTSAPVHQGLFILGGLGS 638
           RMVTRDH PMMGCAPD   I A Y  HQ  ++  ++    WQTT AP+H GL+ILGGLGS
Sbjct: 536 RMVTRDHFPMMGCAPDVNEIWARYEQHQINQQQAEQIRHYWQTTPAPIHDGLYILGGLGS 595

Query: 639 RGLTSGPLAAEILAAQLCGELLPATQDILALLNPNRMWMRKLIKGKAL 686
           RGL+SGPLAAE LAAQL  E LP     L  L+PNRMW+RKL+KGKAL
Sbjct: 596 RGLSSGPLAAECLAAQLTDEPLPLDWPTLNKLSPNRMWLRKLLKGKAL 643