Pairwise Alignments

Query, 414 a.a., RDD domain-containing protein (RefSeq) from Shewanella loihica PV-4

Subject, 376 a.a., hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  251 bits (641), Expect = 3e-71
 Identities = 139/357 (38%), Positives = 216/357 (60%), Gaps = 21/357 (5%)

Query: 67  MLIDGLLISVLAEQAGALFILLVGLTLVIERRSHQLGKALKWGLYLAMLLMTIWVTSDNI 126
           ML+DGL I++ AEQ   LF+LLV   + IE+RS Q G+ LKWGLY AML++ ++ ++ ++
Sbjct: 1   MLVDGLFIALFAEQMDWLFVLLVVGIIYIEKRSRQFGRLLKWGLYAAMLVLMLFTSATSL 60

Query: 127 ISYGDADKGKDGEKVAQTTGQQAESLNALKVMPQIIALSLCEEASCADEKLTKLLSAMDS 186
             +  A+K     +VA ++ +  E + A+   P +++L LCE+A+CA +++  L  +MD 
Sbjct: 61  WDFHIAEKSS---RVASSSHEINEVIPAI---PALVSLGLCEDANCARQQILSLTRSMDK 114

Query: 187 LEASDREKVALASQLIDELSLPSQEKQALMQRLKQAYPNGFAVKQGEVKQDAVKPEALQQ 246
           ++ +D   +     ++  L   +  +    Q L+    NG      +V      P   Q+
Sbjct: 115 VDPTDMSPLERRDMVLATLGSANVSEVDKAQ-LRSETLNGPLWPAVDVSMVKTPPTLTQK 173

Query: 247 EALKQETVKQSTV-------EQEASESSQQALMDEPAALGIDPDK----LDEEEDKPSPY 295
           E +  +  + +++       EQ+  +  ++ + ++       P +    L++  D+    
Sbjct: 174 ENISSQAPQSASLALLKPNSEQQIDKQGEEQIDEQAMLSQSQPTQISRALNDNPDEDESR 233

Query: 296 SLLEWAKGILNDLGLGFGWAAFYFTIFTAWFDGQTLGKKLLNIRVVPLDASSISLWDAFG 355
           S++ W KG  +D+GLGFGWAAFYFT+FTA FDGQTLGKKLL IRV+ LD + ISLW AFG
Sbjct: 234 SIVAWIKGFTSDMGLGFGWAAFYFTVFTAKFDGQTLGKKLLGIRVILLDGAKISLWAAFG 293

Query: 356 RYGGYGAGFATGLLGFLQIYWDANRQAIQDKISETVVVDLS---KPREIPAEESSPE 409
           RYGGY AGF TGLLGF+QI+WDANRQ IQDKIS TVV+DL+   K +++  +++  E
Sbjct: 294 RYGGYAAGFTTGLLGFMQIFWDANRQGIQDKISSTVVIDLAQMHKKQQLEQQQAQAE 350