Pairwise Alignments

Query, 1141 a.a., chromosome segregation protein SMC (RefSeq) from Shewanella loihica PV-4

Subject, 1189 a.a., chromosome segregation protein SMC from Methanococcus maripaludis S2

 Score =  231 bits (590), Expect = 2e-64
 Identities = 274/1227 (22%), Positives = 553/1227 (45%), Gaps = 139/1227 (11%)

Query: 3    LTQIKLAGFKSFVDVTKIPFNQPLTAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDSMA 62
            L++I +  FKSF + +K+      TAI+GPNG GKSN ID + +VLG++SAK LR     
Sbjct: 4    LSEIHMKNFKSFKN-SKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFN 62

Query: 63   DVIFNGSSARRPVSVASVELSFDNQQGRLGGQYASYQAIAVKRQVSRDGESSYFL----- 117
             +I   +  R   + A V L FDN+  ++         + + R+V  +G+++Y+L     
Sbjct: 63   QLITYHNGKRE--NFAEVTLIFDNKDRKMP---VDSDKVGISRKVKINGDNNYYLIWNEE 117

Query: 118  -----NGQ----------KCRRKDITDLFMGTGLGPRSYAIIEQGTISRLIESKPQELRV 162
                 NG+          K ++ +I D+     L    + II QG + ++I++ P E R 
Sbjct: 118  KEVKENGEIKTVKEEKRKKVKKSEILDVIGKISLSADGFNIILQGDLIKIIDTTPNERRK 177

Query: 163  FIEEAAGISRYKERRRETENRIRHTRENLERLGDIR-QELGRQIDKLAEQAEAARQYRAL 221
             I+E +G++ + E+  + +  +   RE +E++ DIR  E+   ++KL ++ E A  +  +
Sbjct: 178  IIDEISGVAEFDEKGEKAKKELEKAREFIEKI-DIRINEVKNNLEKLKKEKEDAETH--V 234

Query: 222  KQTERDQHAQLEVAKYLELSAQSDKLSQEIEAKTLTQSEGDAGRE---ALSRNLTEIKLK 278
            K TE     +L+  KY+  S + + L+  +E    T+ E +A +E      + ++E   K
Sbjct: 235  KLTE-----ELKATKYILTSKKIEFLNGILEK---TKEEIEALKEMKVCFLKEISEYDAK 286

Query: 279  LDELERQEQQQVEAFYLNGN-QIAKLEQEVKHRQQQDAHLKQRIKQDEEKLALLKAQE-- 335
             +++  + Q  +      GN +I +L + +K  +    + K+ +    + L  + +Q   
Sbjct: 287  SNDIRNRLQNLINELNEKGNEEIMELHKSIKEMEVTVDNDKKSLNGALDDLKNVNSQSEK 346

Query: 336  --QALILARGDLD--ERQHGAREAH-QALQLQLELLDEQLGEVELSLEQAQEAESQAKQA 390
              Q L+  R  ++    +   +EA   AL+ ++E L+ +  +++  +E+++      KQ 
Sbjct: 347  KGQDLVETRQKIETIRTETLQKEAEINALKTEMENLETEKKKLKSKVEESETQTEILKQQ 406

Query: 391  VNQCQLRLELTKGEL---KHKQSALA-QVKSQHQSASRQLEQL-SHQDETDNLALQHAQC 445
              +   R+  ++ EL   K++ +AL  ++  +  + ++  E + + Q E + +  +H   
Sbjct: 407  ERKLSERINESQNELYNFKNEFNALENEINKKSFNLAKNKETIETLQKELEEIRSEHEDT 466

Query: 446  ERLAERLDELKGEIELGAATQSQRQEQARQTQAQVEALSQSLAEERGRLAVVKRILPQED 505
            + L + L+++  E+E          E  ++ Q   + L +S A+     A +K +   ED
Sbjct: 467  KSLYKELEDVAVELEYSKKKVVTLLENKKEYQ---DRLDKSHADYIKENAKIKAMKDMED 523

Query: 506  ALQGRALWQAIQV-TPGWEAAVDLLLDGLLTQKVSDKHSGMETEN-------ESGFELSR 557
                RA+   ++   PG       L       K + +++G    N       + G    +
Sbjct: 524  FSLDRAVKSVLEAKLPGVVDIAGNLGKTDAEYKTAIENAGGNRLNYIVVKRMDDGARAIQ 583

Query: 558  SQKWTGLSSEVNLAPWLSRLN-----WADSLSQAKAMLGSIEDDERIVTADGYIVGNGFV 612
              K   L     L   L R+N     + D        +  +E          Y+ GN  +
Sbjct: 584  YLKKNNLGRTTFLP--LDRINGPEALYLDDEGVVGRAIDLVEFKPEHENLFRYVFGNTII 641

Query: 613  LQKAEQGRQLVQ------LKAEQQALELSIAASVEAIDERRAVLAEVNQA-LDEQREALT 665
            ++  +  + L +      +  E + +E S A       ++  +  +++ + L++  E ++
Sbjct: 642  VENLDYAKTLSKDHRARFVTLEGEVIEPSGAMIGGRSRKKSVIKVDIDTSKLEKLAEDIS 701

Query: 666  QLNTSLQGTQLERERLMAQAQATQERIAQQGEQQARLKALLE-------------EQIGE 712
            +L+ +L  T+ E ERL  +      R   + E ++RLK + +              +I E
Sbjct: 702  ELDGTLSETKDEIERLQNKNATYSTR---KMELESRLKIIKDLEHKKEGILTNNGVKIKE 758

Query: 713  LE----AVEQSLSELTSRRDQDEAQLTELTRSADSQVAGLADRRAQHKALGRERQALALQ 768
            LE     +E+ L  L   +++ E ++ E T+    +++G   +R +        +  + +
Sbjct: 759  LELESRKLEEELDYLEGSKEELERKIEEFTK----KISGFTSQRDR-----ISEEIASFE 809

Query: 769  SQQLQQSLQAINTEQALSRQQGEQLERQMKE--------LAQELSELQGQL----EGQDK 816
            + +  + ++ I+       ++  + E ++K         L  ++SEL   +    E +  
Sbjct: 810  NSEHSKRIKVIDENIIAFEKKKNEFENEIKRDAVLIKEVLIPKISELNSNIKELSEKRTI 869

Query: 817  LDGKLQ-----ADAMAAQLNDALARQGEVQAALDALRLQQAELQNQADEIGAKQKQQLGK 871
            L+  +Q      +     L +   R  ++   L  L  ++   + + + +  ++++  G+
Sbjct: 870  LEQNIQFYKNNVEKNFEILKNKKERYEDLTKDLRELTEKKEAFEKELEILNGEKRRVYGR 929

Query: 872  LEHLTQAISALKLRREGIKGQIDSQ------LAQIRSQEVDIAEVQATLDLTVSLSHRQK 925
            +      I++L + +   + +++ +         I     DI       D+    SH Q 
Sbjct: 930  INQNESQINSLSIDKAKYETRLEEEDRKLYVCENIEQISEDITSKIKEFDVDALESH-QI 988

Query: 926  TLERTKAQIEHLGAINLAAIEEFEQQSQRKAYLDSQDADLAKALGSLEEAIRKIDRETKT 985
             LE     I+ L  +N+ AI++++    R   L  +  D           I ++ +  K 
Sbjct: 989  DLE---GHIKKLEPVNMRAIDDYQYIVDRYDELFEKRTDYENEEKKYLHLIEEVSKRKKE 1045

Query: 986  RFKETFDKVNQDLGVLFPKVFGGGSAYLALTD-DDLLETGVTIMARPPGKKNSTIHLLSG 1044
             F + + KV ++   ++ ++  GGS  L+L + +D    G+ I A P  KK  ++ ++SG
Sbjct: 1046 VFMDVYLKVAENYEKIYTEI--GGSGKLSLENPEDPFSGGLLIDASPMNKKLQSLDVMSG 1103

Query: 1045 GEKALTALSLVFAIFRLNPAPFCMLDEVDAPLDDANVDRFCRLVKEMSQSVQFVYISHNK 1104
            GEK+LTAL+ +FAI  LNPAPF +LDEVDA LD  N      ++K  S+  QF+ ISH +
Sbjct: 1104 GEKSLTALAFLFAIQHLNPAPFYVLDEVDAALDTKNAGLIGEMIKNASKDSQFIVISHRE 1163

Query: 1105 ITMELADQLIGVTMHEPGVSRIVAVDI 1131
              +  +D + GV M E G+S++V + I
Sbjct: 1164 QMISKSDVMYGVCM-ENGLSKLVGLKI 1189