Pairwise Alignments

Query, 226 a.a., exonuclease, RNase T and DNA polymerase III (RefSeq) from Shewanella loihica PV-4

Subject, 247 a.a., DNA polymerase III subunit epsilon from Vibrio cholerae E7946 ATCC 55056

 Score = 45.1 bits (105), Expect = 1e-09
 Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 18/192 (9%)

Query: 43  LLAIDLEMTGLNASFD------QILSIGVVPIRQGQLILSEAQHKLVQIEGSVGQSATIH 96
           ++ +D E TG+N          +I+ IG V I   +L        L        ++  +H
Sbjct: 12  IVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRDIQLEAIEVH 71

Query: 97  GILDTHLDAALTPEQAMAWFLSVSEGMVLVAHHAPLDLAFLQ---SGLQACLGEKPRLLA 153
           GI D  L      +     F+   +G  LVAH+AP D+ F+    + L   +G+      
Sbjct: 72  GITDEFLKDKPEYKDVHEEFVDFIKGAELVAHNAPFDVGFMDYEFAKLGGAIGKTSDFCK 131

Query: 154 I-DTLLLEKQRLLRQQEHLQEGCLRLGRSRARYGLPVYAAHNALIDALACGELLLAQVAA 212
           + DTL + K+    ++ +L   C R G   +   L     H AL+DA    ++ L     
Sbjct: 132 VTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTL-----HGALLDAEILADVYLLMT-- 184

Query: 213 MGGATKVKIAEL 224
            GG T ++ + +
Sbjct: 185 -GGQTSLQFSSV 195