Pairwise Alignments

Query, 670 a.a., DNA topoisomerase III (RefSeq) from Shewanella loihica PV-4

Subject, 872 a.a., DNA topoisomerase I (RefSeq) from Shewanella amazonensis SB2B

 Score = 99.8 bits (247), Expect = 5e-25
 Identities = 145/603 (24%), Positives = 246/603 (40%), Gaps = 85/603 (14%)

Query: 88  LRKLVKQASQLVNAGDPDREGQLLVDEVIAYLGVKGDKLEQTQRLLVSDLNPQAVKRALG 147
           L+ L   A Q+  A D DREG+ +   +   +G  GD+  + +R++ +++   A++ A  
Sbjct: 104 LQSLASSADQIYLATDLDREGEAIAWHLQEVIG--GDE-SRYKRVVFNEITKGAIQEAFS 160

Query: 148 Q---LRSNREFIPLSTSALARSRADWLYGMNMTRAYTLQGRKVGYQGVLSVGRVQTPLLG 204
           +   L +N     +  +  AR   D + G  ++    L  +KV     LS GRVQ+  + 
Sbjct: 161 RPTDLNTN-----MVNAQQARRFLDRVVGFMVS---PLLWKKVARG--LSAGRVQSVAVR 210

Query: 205 LVVRRDEAIEHFVSKPFYEVLANLYTQEQAHFKAKWQPSEACQPYMDEEGRVLSRRLAEN 264
           LVV R+  I+ FV + F++V A L T   A    +         Y +E    +++  A  
Sbjct: 211 LVVEREAEIKAFVPEEFWDVHATLSTPAAAELVME------VSRYRNEAFEPVTQSEAMA 264

Query: 265 VVGRITEQPAKVTDLQAKDKQQGQPLPYNLSSLQIDAAKRFGMSAKTVLDTCQSLYEKHK 324
            V  + +    VTD + K        P+  S+LQ  A+ R G   K  +   Q LYE   
Sbjct: 265 AVNALEKAAFTVTDREDKATSSKPSAPFITSTLQQAASTRLGFGVKKTMMLAQRLYEAGH 324

Query: 325 LITYPRSDSRYLPKEQLALAPSVIGAVLKGAGELTAQCAAPDLKIVSKAWNDAKVDAHHA 384
            ITY R+DS  L +E L    +V   + K  G  +       ++  SK   +   +AH A
Sbjct: 325 -ITYMRTDSTNLSQEAL---ENVRAHIEKEFG--SKYLPESPIRYGSK---EGAQEAHEA 375

Query: 385 IVPTEKVANLSALTQAEK---QIYLQLARQYLAQFYPVYRYHETQVEVEIAGGHFHTKAK 441
           I P+      + L   E+   ++Y  + RQ++A       Y  T++  +   G +  KA 
Sbjct: 376 IRPSNVKVESATLIDMERDAQRLYELIWRQFVACQMTPAVYDATRITAK--AGDYELKAS 433

Query: 442 QEIAL--GWKQLFP----KRSDDKTDGEGDEALAQLPPLHKGQMLHSGQGELIEKQTQPP 495
             I    GW ++ P    K  +D T          LP +  G ML     +  +  T+PP
Sbjct: 434 GRILKFDGWTRVQPALKKKNEEDNT----------LPDVQVGDMLSLKALDPKQHFTKPP 483

Query: 496 KAFTDATLLSAMTGISRYVTNPEIRKILKETDGLGTEATRAGIIELLFKRGFLARQGKSI 555
             +++A+L+  +                 E  G+G  +T A II  +  RG++  + +  
Sbjct: 484 ARYSEASLVKEL-----------------EKRGIGRPSTYAAIISTIQDRGYVKVENRRF 526

Query: 556 VSTPVGRGLINSLPESAT---TPDMTALWESHLDAISRKEAKYLSFMAPLVESLNGLIMQ 612
            +  +G  +   L ES +     D TA  E  LD +++ +  +   +          + +
Sbjct: 527 YAEKMGEIVTERLVESFSELMNYDFTAGMEQTLDDVAKGDKDWKGVLDGFYSGFTAKLEK 586

Query: 613 ------AGAQLPKALQGVEAPKRSFKKRGYGNRRGTATGAKGKASGAKKTAARAASKTRA 666
                 AG   P  +   + P  +      G + G  TG  G   G    A     K R 
Sbjct: 587 AEAEPDAGGMRPNQMVLTDIPCPT-----CGRQMGIRTGTTGVFLGCSGYA--LPPKERC 639

Query: 667 KTS 669
           KT+
Sbjct: 640 KTT 642