Pairwise Alignments

Query, 670 a.a., DNA topoisomerase III (RefSeq) from Shewanella loihica PV-4

Subject, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

 Score =  146 bits (369), Expect = 3e-39
 Identities = 158/610 (25%), Positives = 262/610 (42%), Gaps = 82/610 (13%)

Query: 3   LYIAEKPSLGRAIADVLPKPHKKGEG----YITAANGDT--VSWCIGHLLEQAEPDSYDP 56
           L I EKP++ + IA+ L KP KK       Y    NG++  V+  +GHL    E      
Sbjct: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQEKTKT-- 61

Query: 57  AFKSWSFDHLPIVPQQW----KMTPKSKTRGQLSVLRKLVKQASQLVNAGDPDREGQLLV 112
                 F   P+    W     +  K   +  +  L+K+ K A++   A D D EG+L+ 
Sbjct: 62  -----KFGDYPVYDINWVPASTLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEGELIG 116

Query: 113 DEVIAYLGVKGDKLEQTQRLLVSDLNPQAVKRALGQLRSNREFIPLSTSALARSRADWLY 172
              + +    G K     RL  S L  + + +A      N     L  +  +R + DW +
Sbjct: 117 YHALNFSC--GQK--NAHRLRFSSLTKKEILKAYEN--PNEIDFGLVDAGDSRHKIDWYF 170

Query: 173 GMNMTRAYTLQGRKVGYQGVLSVGRVQTPLLGLVVRRDEAIEHFVSKPFYEVLANLYTQE 232
           G+N++RA       V     LS GRVQ P L  +V ++  I +FV  P++ + A L    
Sbjct: 171 GINVSRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALLDNDL 230

Query: 233 QA--HFKAKWQPSEACQPYMDEEGRVLSRRLAENVVGRITEQPAKVTDLQAKDKQQGQPL 290
            A    +  W   +A + Y   +G                ++ A V+D++   K      
Sbjct: 231 IAVHELEKFWDEEQANKAYEKVKG----------------QKQATVSDVKKSMKTIPPNP 274

Query: 291 PYNLSSLQIDAAKRFGMSAKTVLDTCQSLYEKHKLITYPRSDSRYLPKEQLALAPSVIGA 350
           P++L +LQ +A   F  S K   +  Q LYEK    +YPR+ S+ LP ++ A    V+  
Sbjct: 275 PFDLGALQREAHNMFRFSPKKTQEVAQKLYEK-GYCSYPRTSSQKLPDDK-AYMDEVLKN 332

Query: 351 VLKGAG--ELTAQCAAPDLKIVSKAWNDAKVDAHHAI-VPTEKVANLSALTQAEKQIYLQ 407
           + K              + K +S   +D    A HA+ VP EK      L   E ++Y  
Sbjct: 333 LSKNKNYKPYIETILNENRKPISGKNDDPAHPAVHAVDVPKEK------LPDDELKLYEL 386

Query: 408 LARQYLAQFYPVYRYHETQVEVEIAGGHFHTKAKQEIALGWKQLFPKRSDDKTDGEGDEA 467
           +AR+ +A ++   +   +++ ++I G  F     + +  GW +++     D+        
Sbjct: 387 IARRTIALYWDNAKREYSKINLDINGETFKLSGSRTVEEGWHEIYYYTKFDE-------- 438

Query: 468 LAQLPPLHKGQMLHSGQGELIEKQTQPPKAFTDATLLSAMTGISRYVTNPEIRKILKETD 527
             +LP L K  +++        K+T+PPK +T A+++  +          E RK      
Sbjct: 439 -VELPELKKNDVINVNNINFEAKETKPPKRYTMASIIKEL----------EKRK------ 481

Query: 528 GLGTEATRAGIIELLFKRGFLARQGKSIVSTPVGRGLINSLPE---SATTPDMTALWESH 584
            LGT+ATRA I+E L KRG++   G S+  T +G G+  +L +         +T   E  
Sbjct: 482 -LGTKATRADILEKLTKRGYVIEDG-SLTVTDLGIGVTETLRKYCPEIVEETLTRDLEDK 539

Query: 585 LDAISRKEAK 594
           L+ I  K+ K
Sbjct: 540 LELIQDKKIK 549