Pairwise Alignments

Query, 1113 a.a., DNA polymerase III, subunits gamma and tau (RefSeq) from Shewanella loihica PV-4

Subject, 653 a.a., DNA polymerase III subunits gamma and tau (EC 2.7.7.7) from Xanthomonas campestris pv. campestris strain 8004

 Score =  435 bits (1119), Expect = e-126
 Identities = 266/609 (43%), Positives = 352/609 (57%), Gaps = 25/609 (4%)

Query: 1   MSYQVLARKWRPATFEQVVGQSHVLHALTNALSQNRLHHAYLFTGTRGVGKTSLARLFAK 60
           MSY VLARKWRP  F ++VGQ HV+ AL+NAL   R+HHA+LFTGTRGVGKT++AR+FAK
Sbjct: 1   MSYLVLARKWRPKRFAELVGQEHVVRALSNALDSGRVHHAFLFTGTRGVGKTTIARIFAK 60

Query: 61  GLNCEQGVTATPCGQCASCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120
            LNCE G +A PCG C +C++I  GR++DL+E+DAAS T VDD RE+++N QY P+RG+F
Sbjct: 61  SLNCETGTSADPCGTCPACLDIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKF 120

Query: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTL 180
           KVYLIDEVHMLS+++FNALLKTLEEPPEHVKFLLATTDPQ+LPVTVLSRCLQFNLK L  
Sbjct: 121 KVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKRLDE 180

Query: 181 DEICVQLGHILAQEQVGYDDGAVKLLAKAANGSMRDALSLTDQAIAFGAGQVRLTQVQTM 240
           D+I  Q+  ILA E++  D  A+  L+KAA+GS+RD LSL DQAIA+  G +R   V+TM
Sbjct: 181 DQIQGQMTRILAAEEIESDPSAIVQLSKAADGSLRDGLSLLDQAIAYAGGALREDVVRTM 240

Query: 241 LGTIDEHHVIVLLKALCDGDVDLLMKVTGDVLSFGADPHEVLRSLLELLHQITLTQFAPS 300
           LGT+D   V  +L+AL DGD   L+KV   +  F  D   VL +L E LH+I + Q  PS
Sbjct: 241 LGTVDRTQVGAMLQALSDGDGAQLLKVVAALAEFSPDWSGVLEALAEALHRIQVQQLVPS 300

Query: 301 AAQLSQYAEQIKAFAKQLRPEQVQLYYQLLLNGRQDLPHAPDPKSGLEMALLRAIAFVPE 360
            A +    +    FA QLRPE VQL+YQ+ LNGR+DL  AP P++G EMA+LR +AF P 
Sbjct: 301 VAFVGDGIDP-TGFAAQLRPEVVQLWYQMALNGRRDLYLAPSPRAGFEMAVLRMLAFRPA 359

Query: 361 APVQRWMGEAGSEILLPDTPLPELGKGEDVAPTSARPDGTVKPVKPAESVLNSQAEAEVE 420
           A V    G+ G               G     T+           PA +  +++A A+V 
Sbjct: 360 AAVPAGSGDDGR----------GASAGGHTRGTATGVQAAPAAAAPARAATSAKA-ADVS 408

Query: 421 DKAEVEEKAKVEASNEASVAMLSDAQASTAEQTNKLSDTDGPFEANLVAVDLVEADSTEK 480
               V   A   A+  + V +L  A A  A         D P  A  V    V A +  +
Sbjct: 409 PAPVV--SAPPVAAAPSPVVVLPTAAAEPAPSAPPARTDDTPPWA--VDDAPVRAQAAPQ 464

Query: 481 DALEEDEGALDLFAEQQLILSQAQSKGHSPELSAELSTNHSPEPSPEPESSPEPSPQETS 540
            A  E   A+ L A +  +   A     +   + +     +P  +P P + P  +  +  
Sbjct: 465 RATAEVPAAVPLMAPEAAMALPATVADDAAPAAMDAVVPVAPPSAPAPVTPPAATFDDGH 524

Query: 541 SANKSPVSEASAESKVDASTSAATA-------QGGEAALSTEPKMPAESVEQTASIAEQA 593
            A+     E    S ++  +    A       + G   L+  P    E +    SIA  A
Sbjct: 525 IADAEQWLELVTRSGLNGPSRQLAANAAFIGHRDGVLRLALAPGF--EYLNSERSIANLA 582

Query: 594 SSSADESGS 602
            + A E G+
Sbjct: 583 QALAPELGN 591



 Score = 55.8 bits (133), Expect = 1e-11
 Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 5/158 (3%)

Query: 930  SPAAQEVSAPSAVTEPVSQTTQVAFVADEITGHDTDLK-WYRLMSALEIGGRVRQLAVNA 988
            +PAA +   P A     +  T  A   D+  GH  D + W  L++   + G  RQLA NA
Sbjct: 494  APAAMDAVVPVAPPSAPAPVTPPAATFDD--GHIADAEQWLELVTRSGLNGPSRQLAANA 551

Query: 989  VCKAFSEP-LPLVLKPNQKHLAAPGAISQLEDALSKALGGSCQVAFSVGVEPERETPLEI 1047
                  +  L L L P  ++L +  +I+ L  AL+  LG + ++    G   + ET  E 
Sbjct: 552  AFIGHRDGVLRLALAPGFEYLNSERSIANLAQALAPELGNTPRIVIETG-SADVETLHER 610

Query: 1048 RQRFHRELLEQAHQGLLQDENIQWLTQVMQAEMEPDSL 1085
              R   E    A    + D N+Q L Q   A + PDS+
Sbjct: 611  ANRQKGERQSAAETAFMNDPNVQQLIQQQGARVVPDSI 648