Pairwise Alignments
Query, 1113 a.a., DNA polymerase III, subunits gamma and tau (RefSeq) from Shewanella loihica PV-4
Subject, 909 a.a., DNA-directed DNA polymerase (RefSeq) from Shewanella amazonensis SB2B
Score = 591 bits (1523), Expect = e-173
Identities = 369/799 (46%), Positives = 471/799 (58%), Gaps = 63/799 (7%)
Query: 1 MSYQVLARKWRPATFEQVVGQSHVLHALTNALSQNRLHHAYLFTGTRGVGKTSLARLFAK 60
MSYQVLARKWRPA F +VVGQSHVLHALTNAL Q RLHHAYLFTGTRGVGKTSLARLFAK
Sbjct: 1 MSYQVLARKWRPANFAEVVGQSHVLHALTNALGQQRLHHAYLFTGTRGVGKTSLARLFAK 60
Query: 61 GLNCEQGVTATPCGQCASCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120
GLNCEQG+TATPCGQC++C EIA+GRFVDLIEVDAASRTKVDDTRE+LDNVQYRP+RGRF
Sbjct: 61 GLNCEQGITATPCGQCSACREIAEGRFVDLIEVDAASRTKVDDTREILDNVQYRPSRGRF 120
Query: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTL 180
KVYLIDEVHMLS+SSFNALLKTLEEPPEHVKFLLATTDPQ+LPVTVLSRCLQFNLK+LT
Sbjct: 121 KVYLIDEVHMLSKSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKALTQ 180
Query: 181 DEICVQLGHILAQEQVGYDDGAVKLLAKAANGSMRDALSLTDQAIAFGAGQVRLTQVQTM 240
+I QL +L+ E +G+D+ A+ LLAKAA GSMRDALSLTDQAIAFG G+VRL QVQTM
Sbjct: 181 PQIQAQLAAVLSGEGLGFDEDALSLLAKAAAGSMRDALSLTDQAIAFGGGEVRLAQVQTM 240
Query: 241 LGTIDEHHVIVLLKALCDGDVDLLMKVTGDVLSFGADPHEVLRSLLELLHQITLTQFAPS 300
LG ID+ ++ L ALC GD++ L+ + FGAD EVLR+LLELLHQI+L QFAP+
Sbjct: 241 LGAIDKGQILNLFDALCQGDIETLLTTARTAMGFGADADEVLRALLELLHQISLAQFAPA 300
Query: 301 AAQLSQYAEQIKAFAKQLRPEQVQLYYQLLLNGRQDLPHAPDPKSGLEMALLRAIAFVPE 360
A +S + A+A+ L+PEQVQLYYQ+LL+GR+DLP+APDP SGLEM+LLRA+ FVPE
Sbjct: 301 TASISDNGAAVLAWAQALKPEQVQLYYQILLSGRKDLPYAPDPASGLEMSLLRAVGFVPE 360
Query: 361 APVQRWMGEAGSEILLPDTPLPELGKGEDVAPTSARPDGTVKPVKPAESVLNSQAEAEVE 420
PV RW GE V+ A +K V P+ ++
Sbjct: 361 KPVSRWQ------------------SGEGVSAAEA-----LKLVAPSTEGKSAPQADTAP 397
Query: 421 DKAEVEEKAKVEASNEASVAMLSDAQASTAEQTNKLSDTDGPFEANLVAVDLVEADSTEK 480
+ A V E A +A +A A + +T T+ P +V EA S +
Sbjct: 398 NHAVVTETPVAAAVPQAGIASTLVAGTHSPVRT-----TEEPAVKADSSVATEEAPSGDD 452
Query: 481 DALEEDEGALDLFAEQQLILSQAQSKGHSPELSAELSTNHSPEPSPEPESSPEPSPQETS 540
D E + A LFAEQ L++SQA+S+G +P A + ++ P E + +
Sbjct: 453 DVHEAESDA--LFAEQNLLISQAESQGFNPGYDAVNAGDNDLPLHDAPPLFDEMAYADYP 510
Query: 541 SANKSPVSEASAESKVDASTSAATAQGGEAALSTEPKMPAESVEQTASIAEQASSSADES 600
+ + +SE E +D A Q ++ + Q+ +AE + S
Sbjct: 511 QSYSADISETPVERGLD---DGAGFQLQNEQSQSDHLQSGATGAQSKVVAESQPVNTPAS 567
Query: 601 GSFYDDLYFSSDDDESGDPSDYEAYLAYQQGQDSQASGDISSSAATRPVDNSAQVSSAPV 660
+F DDL +A LA ++ S + + A +PV +S + V
Sbjct: 568 -AFGDDL--------------LDAVLAAREDLLSGITSEAKEDEAKKPV-SSFERRRMAV 611
Query: 661 NENAPLGGLTPDTGLASED------TTPNLLEDDLLDAVLN-ARQSLLSDLEEDAAKEDA 713
E + + T T ++D + N L A + + + +D + ++ A
Sbjct: 612 QETSTVPVTTAPTDKGTQDEISLGAMSANTQTATLTQATASVSGADVAADYDRPPWEDTA 671
Query: 714 AKESASKKP---LVGAKKPGANQAQASSEQQAGEENKSGAEPYV----PPKRPEQAALSV 766
+ +SK P L A + A S +A E + A P+ P K Q AL
Sbjct: 672 TPDDSSKAPELALDYAVNRESAPVNAESPDKAHPEEYTSAAPHTQTPQPLKAESQTALQA 731
Query: 767 ETAPSGEATSQSFGETAQN 785
+ + S S G N
Sbjct: 732 KGQTHTDEVSSSDGVHCAN 750
Score = 195 bits (495), Expect = 2e-53
Identities = 179/614 (29%), Positives = 264/614 (42%), Gaps = 141/614 (22%)
Query: 528 PESSPEPSPQETSSANKSPVSEASAESKVDASTSAATAQGGEAALSTEPKMPAESVEQTA 587
P + + +PQ ++ N + V+E + V + A+T G + + PA + +
Sbjct: 383 PSTEGKSAPQADTAPNHAVVTETPVAAAVPQAGIASTLVAGTHSPVRTTEEPAVKADSSV 442
Query: 588 SIAEQASSSAD----ESGSFY--DDLYFSSDDDESGDPS--------------------D 621
+ E S D ES + + +L S + + +P D
Sbjct: 443 ATEEAPSGDDDVHEAESDALFAEQNLLISQAESQGFNPGYDAVNAGDNDLPLHDAPPLFD 502
Query: 622 YEAYLAYQQGQDSQASGDISSSAATRPVDNSAQV---SSAPVNENAPLGGLTPDTGLASE 678
AY Y Q S DIS + R +D+ A + +++ G + + +E
Sbjct: 503 EMAYADYPQSY----SADISETPVERGLDDGAGFQLQNEQSQSDHLQSGATGAQSKVVAE 558
Query: 679 ----DTTPNLLEDDLLDAVLNARQSLLSDLEEDAAKEDAAKESASKKPLVGAKKPGANQA 734
+T + DDLLDAVL AR+ LLS + +A KE +KKP+
Sbjct: 559 SQPVNTPASAFGDDLLDAVLAAREDLLSGITSEA------KEDEAKKPV----------- 601
Query: 735 QASSEQQAGEENKSGAEPYVPPKRPEQAALSVETAPSGEATSQ--SFGETAQNAQDNALI 792
+ E + + E + + V TAP+ + T S G + N Q A +
Sbjct: 602 ------SSFERRRMAVQ--------ETSTVPVTTAPTDKGTQDEISLGAMSANTQ-TATL 646
Query: 793 VEAVSNTAVTNEAGKTEHGTKAPETQHNYSAQQPNAYLNDEDRPPW---VSPEPSLQAVT 849
+A ++ + + A D DRPPW +P+ S +A
Sbjct: 647 TQATASVSGADVAA-------------------------DYDRPPWEDTATPDDSSKAPE 681
Query: 850 APSDEVPNL-AGQVDTQSESHARAD---AAAQIEQGLDELSLEDQSLDDQSLDDQSLDDQ 905
D N + V+ +S A + +AA Q L E Q+ Q
Sbjct: 682 LALDYAVNRESAPVNAESPDKAHPEEYTSAAPHTQTPQPLKAESQTAL-----------Q 730
Query: 906 SSEDLNSDDQGSNESGAFGNHPVQSPAAQEVSAPSAVTEPVSQTTQVAFVADEITGHDTD 965
+ ++D+ S++ NH SP I G +TD
Sbjct: 731 AKGQTHTDEVSSSDGVHCANHSAASP---------------------------IGGDETD 763
Query: 966 LKWYRLMSALEIGGRVRQLAVNAVCKAFSEPLPLVLKPNQKHLAAPGAISQLEDALSKAL 1025
L+WY+LM ALEIGGRVRQLAVN+VC A+S P+PLVLK +QKHLAAP AI QL +ALSKAL
Sbjct: 764 LRWYKLMGALEIGGRVRQLAVNSVCLAWSNPIPLVLKQDQKHLAAPVAIGQLNEALSKAL 823
Query: 1026 GGSCQVAFSVGVEPERETPLEIRQRFHRELLEQAHQGLLQDENIQWLTQVMQAEMEPDSL 1085
G ++A VG P RETPL+IR RFHRELL A L D + L Q A + DS+
Sbjct: 824 GHEAEIALEVGEVPGRETPLDIRARFHRELLSDARGALNTDPAVLRLMQQAGAWFDDDSI 883
Query: 1086 SYLPELLGKRGQTI 1099
SY P+LL +RG+ +
Sbjct: 884 SYPPDLLAQRGRAL 897
Score = 27.3 bits (59), Expect = 0.005
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 16/109 (14%)
Query: 387 GEDVAPTSARP---------DGTVKPVKPAESVLNSQA---EAEVEDKAEVEEKAKVEAS 434
G DVA RP D + P + +N ++ AE DKA EE
Sbjct: 655 GADVAADYDRPPWEDTATPDDSSKAPELALDYAVNRESAPVNAESPDKAHPEEYTSAAPH 714
Query: 435 NEASVAMLSDAQ----ASTAEQTNKLSDTDGPFEANLVAVDLVEADSTE 479
+ + +++Q A T+++S +DG AN A + D T+
Sbjct: 715 TQTPQPLKAESQTALQAKGQTHTDEVSSSDGVHCANHSAASPIGGDETD 763