Pairwise Alignments

Query, 1113 a.a., DNA polymerase III, subunits gamma and tau (RefSeq) from Shewanella loihica PV-4

Subject, 659 a.a., DNA-directed DNA polymerase (NCBI) from Rhodospirillum rubrum S1H

 Score =  310 bits (793), Expect = 3e-88
 Identities = 183/424 (43%), Positives = 257/424 (60%), Gaps = 18/424 (4%)

Query: 3   YQVLARKWRPATFEQVVGQSHVLHALTNALSQNRLHHAYLFTGTRGVGKTSLARLFAKGL 62
           Y+VLARK+RPA+F+ ++GQ  ++  LTNA+   RL  A++ TG RGVGKT+ ARL A+ L
Sbjct: 38  YRVLARKYRPASFDALIGQEALVRTLTNAIDSGRLAQAWMLTGVRGVGKTTTARLIARAL 97

Query: 63  NC-----EQGVTATPCGQCASCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTR 117
           NC     + GVT TPCG C  C  IA+ R VD++E+DAASRT V D RE+LD V+YRP  
Sbjct: 98  NCVGADGKGGVTITPCGVCEHCKAIAEDRHVDVLEMDAASRTGVGDIREILDGVRYRPAV 157

Query: 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKS 177
            R KVY+IDEVHMLS ++FNALLKTLEEPPEHVKF+ ATT+ +++PVTVLSRC +F+L+ 
Sbjct: 158 ARTKVYIIDEVHMLSTAAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQRFDLRR 217

Query: 178 LTLDEICVQLGHILAQEQVGYDDGAVKLLAKAANGSMRDALSLTDQAIAFGAGQVRLTQV 237
           ++  E+      I   E       A+ L+A+AA+GS+RD LSL DQAIA G G V   QV
Sbjct: 218 VSAAELSGHFLRIAGLEGAEIAPSALTLIARAADGSVRDGLSLLDQAIAHGGGTVSEAQV 277

Query: 238 QTMLGTIDEHHVIVLLKALCDGDVDLLMKVTGDVLSFGADPHEVLRSLLELLHQITLTQF 297
             MLG  D   +  LL AL  G +   + +     + GADP  +++ LL+L+H +T  + 
Sbjct: 278 AEMLGLADRARIFDLLDALLAGRIAESLDLLDRQYALGADPLVIVQDLLDLVHWMTRVKV 337

Query: 298 APSAAQLSQYAE----QIKAFAKQLRPEQVQLYYQLLLNGRQDLPHAPDPKSGLEMALLR 353
            P +A+ +   E    + +A A++L    +   +Q+LL G  +   AP P   +EM L+R
Sbjct: 338 VPVSAEDAAVPEAERTRGRAMAERLSMAVLNRCWQILLKGLGEARGAPVPLQAVEMVLIR 397

Query: 354 AIAFVPEAPVQR---WMGEAGSEILLPDTPLPELGKGEDVA---PTS--ARPDGTVKPVK 405
            +A+  + P       M   G++   P  P P    G   A   P S  +R D   +P +
Sbjct: 398 -LAYASDLPTPEEALKMIAGGAQPAAPRPPAPHSPAGPPPAAPPPPSPPSRADEPPRPSR 456

Query: 406 PAES 409
           P++S
Sbjct: 457 PSQS 460