Pairwise Alignments

Query, 1113 a.a., DNA polymerase III, subunits gamma and tau (RefSeq) from Shewanella loihica PV-4

Subject, 650 a.a., DNA polymerase III subunits gamma and tau from Marinobacter adhaerens HP15

 Score =  443 bits (1139), Expect = e-128
 Identities = 264/517 (51%), Positives = 329/517 (63%), Gaps = 22/517 (4%)

Query: 1   MSYQVLARKWRPATFEQVVGQSHVLHALTNALSQNRLHHAYLFTGTRGVGKTSLARLFAK 60
           MSYQVLARKWRP TFE +VGQ HVL AL +AL   RLHHAYLFTGTRGVGKT++ RL A+
Sbjct: 1   MSYQVLARKWRPRTFEDMVGQEHVLQALIHALESQRLHHAYLFTGTRGVGKTTIGRLLAR 60

Query: 61  GLNCEQGVTATPCGQCASCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120
            LNCE GVT  PCG+C+SC EI +GRFVDLIE+DAASRT VDD REL DNVQY PTRGR+
Sbjct: 61  CLNCETGVTPNPCGECSSCQEIQEGRFVDLIEIDAASRTGVDDMRELTDNVQYAPTRGRY 120

Query: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTL 180
           KVYLIDEVHML+  SFNA LKTLEEPPEHVKFLLATTDPQ+LPVTVLSRCLQFNLK +T 
Sbjct: 121 KVYLIDEVHMLTNQSFNAFLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKRMTP 180

Query: 181 DEICVQLGHILAQEQVGYDDGAVKLLAKAANGSMRDALSLTDQAIAFGAGQVRLTQVQTM 240
           + I   L H+L  E++ +++ A+ LLA+AA+GSMRDALSLTDQAIAFG  ++  + V  M
Sbjct: 181 EHIAGHLRHVLGAEEIPFEEPALWLLARAADGSMRDALSLTDQAIAFGNQKLSASDVSNM 240

Query: 241 LGTIDEHHVIVLLKALCDGDVDLLMKVTGDVLSFGADPHEVLRSLLELLHQITLTQFAP- 299
           LGTID+  +  ++ AL +GD   L+     +  F  D   +L  LL L H++T+ Q  P 
Sbjct: 241 LGTIDQRDIERIVNALVEGDGPALLAEISRISDFAPDYSVILADLLSLFHRVTMEQVVPG 300

Query: 300 SAAQLSQYAEQIKAFAKQLRPEQVQLYYQLLLNGRQDLPHAPDPKSGLEMALLRAIAFVP 359
           SA      AEQ++A A++L  E  QL+YQ  L GR+DL   PD + G EM LLR +AF P
Sbjct: 301 SADNALGDAEQVQALARKLSAEDAQLFYQSALIGRKDLTITPDARMGFEMTLLRMLAFRP 360

Query: 360 -----EAPVQRWMGE-AGSEIL-LPD-TPLPELGKGEDVAPTSARPDGTVKPVKPAE--S 409
                E P     G+ A SE    PD  P P++ + +           T    +PA+  S
Sbjct: 361 GADRREPPAISSGGQSAASEPRDEPDPAPTPQVEQKQPEPQPQGSEPVTEMAAEPAQEAS 420

Query: 410 VLNSQAEAEVEDKAEVEEK---AKVEASNEASVAMLSDAQASTA---EQTNKLSD----T 459
            L  Q E E E   E E +   A   A  +AS     DAQA  A   E++  L+D    T
Sbjct: 421 ELPGQPEPEPESTPEPEPEMPAAPPVADEDASWLASLDAQAEAAGEYEESYPLNDEAPVT 480

Query: 460 DGPFEANLVAVDLVEADSTEKDALEEDEGALDLFAEQ 496
           + P  A + A  + +A    + A  E + A++   EQ
Sbjct: 481 EEPAPA-VSAEPVEQAAPAPEPAFVESDPAMEPAVEQ 516



 Score = 35.4 bits (80), Expect = 1e-05
 Identities = 47/245 (19%), Positives = 83/245 (33%), Gaps = 28/245 (11%)

Query: 841  PEPSLQAVTAPSDEVPNLAGQVDTQSESHARADAAAQIEQGLDELSLEDQSLDDQSLDDQ 900
            PEP  ++   P  E+P      D  +   A  DA A+     +E                
Sbjct: 426  PEPEPESTPEPEPEMPAAPPVADEDASWLASLDAQAEAAGEYEE---------------- 469

Query: 901  SLDDQSSEDLNSDDQGSNESGAFGNHPVQSPAAQEVSAPSAVTEPVSQTTQVAFVADEIT 960
                  S  LN +   + E       P  S    E +AP+     V     +    ++  
Sbjct: 470  ------SYPLNDEAPVTEEPA-----PAVSAEPVEQAAPAPEPAFVESDPAMEPAVEQAP 518

Query: 961  GHDTDLKWYRLMSALEIGGRVRQLAVNAVCKAFSEPLPLVLKPNQKHLAAPGAISQLEDA 1020
              + +  W+R   +L I G    LA +       + + L +      L       ++  A
Sbjct: 519  EPEGEFVWHRDFRSLGIVGMPGNLASHGAMSRDGDVITLTIDEGHARLLNSRHEEKILAA 578

Query: 1021 LSKALGGSCQVAFSVGVEPERETPLEIRQRFHRELLEQAHQGLLQDENIQWLTQVMQAEM 1080
            L    G S Q+    G  P  +TP    +R  +   E A   + +D  ++ + +  +A +
Sbjct: 579  LRNRFGDSIQLRTEQG-NPGPDTPAAYEERQRKARQEAAEASIHRDPVVKSIVERFEARV 637

Query: 1081 EPDSL 1085
              DS+
Sbjct: 638  VEDSI 642