Pairwise Alignments

Query, 1113 a.a., DNA polymerase III, subunits gamma and tau (RefSeq) from Shewanella loihica PV-4

Subject, 633 a.a., DNA polymerase III subunit gamma/tau from Klebsiella michiganensis M5al

 Score =  455 bits (1170), Expect = e-132
 Identities = 245/449 (54%), Positives = 307/449 (68%), Gaps = 14/449 (3%)

Query: 1   MSYQVLARKWRPATFEQVVGQSHVLHALTNALSQNRLHHAYLFTGTRGVGKTSLARLFAK 60
           MSYQVLARKWRP TF  VVGQ HVL AL N LS  R+HHAYLF+GTRGVGKTS+ARL AK
Sbjct: 1   MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60

Query: 61  GLNCEQGVTATPCGQCASCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120
           GLNCE G+TATPCG C +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY P RGRF
Sbjct: 61  GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120

Query: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTL 180
           KVYLIDEVHMLSR SFNALLKTLEEPP HVKFLLATTDPQ+LPVT+LSRCLQF+LK+L +
Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180

Query: 181 DEICVQLGHILAQEQVGYDDGAVKLLAKAANGSMRDALSLTDQAIAFGAGQVRLTQVQTM 240
           ++I  QL HIL  EQ+ ++  A++LL++AA+GS+RDALSLTDQAIA G G++    V  M
Sbjct: 181 EQIRHQLEHILGAEQIAFEPRALQLLSRAADGSLRDALSLTDQAIASGDGRLTAESVSAM 240

Query: 241 LGTIDEHHVIVLLKALCDGDVDLLMKVTGDVLSFGADPHEVLRSLLELLHQITLTQFAPS 300
           LGT+D+   + L++AL   D + +M    +  + G +   +L  +  LLH+I + Q +PS
Sbjct: 241 LGTLDDDQALSLIEALVVADGERVMAGVNEAAARGVEWEALLVEMQSLLHRIAMVQLSPS 300

Query: 301 A--AQLSQYAEQIKAFAKQLRPEQVQLYYQLLLNGRQDLPHAPDPKSGLEMALLRAIAFV 358
           A  A ++    +++  A+ + P  VQLYYQ LL GR++LP+APD + G+EM LLRA+AF 
Sbjct: 301 ALGADMAAIELRMRELARTVPPTDVQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360

Query: 359 PEAPVQRWMGEAGSEILLPDTPLPELGKGEDVAPTSARP----DGTVKPVKPAESVLNSQ 414
           P  P+         E   P  P  +    +   P SA P      T   V  A S L   
Sbjct: 361 PRMPL--------PEPEAPPMPAIQAAPVQQAVPESAPPPPNLPQTTSQVLAARSQLQRS 412

Query: 415 AEAEVEDKAEVEEKAKVEASNEASVAMLS 443
             A    K+E    ++    N A++  LS
Sbjct: 413 QGAPTPKKSEPAAASRARPVNNAALERLS 441



 Score = 70.5 bits (171), Expect = 4e-16
 Identities = 67/276 (24%), Positives = 119/276 (43%), Gaps = 16/276 (5%)

Query: 823  AQQPNAYLNDEDRPPW--VSPEPSLQAVTAPSDEVPNL--------AGQVDTQSESHARA 872
            A  P   L + + PP   +   P  QAV   +   PNL        A +   Q    A  
Sbjct: 358  AFHPRMPLPEPEAPPMPAIQAAPVQQAVPESAPPPPNLPQTTSQVLAARSQLQRSQGAPT 417

Query: 873  DAAAQIEQGLDELSLEDQSLDDQSLDDQSLDDQSSEDLNSDDQGSNESGAFGNHPVQSPA 932
               ++         + + +L+  S   + +  + +           E+  + +  V    
Sbjct: 418  PKKSEPAAASRARPVNNAALERLSSITERVQARPAAAALEKAPAKKEAYRWKSTTVVETV 477

Query: 933  AQEVSAPSAVTEPVS--QTTQVAF-VADEITGHDTDLKWYRLMSALEIGGRVRQLAVNAV 989
             +EV+ P A+ + +   +T ++A  +A E    D+   W   +S L +   V Q+A+NA 
Sbjct: 478  KEEVATPKALKKALEHEKTPELAAKLAVEAVERDS---WAAEVSQLAVPKLVEQVALNAW 534

Query: 990  CKAFSEPLPLVLKPNQKHLAAPGAISQLEDALSKALGGSCQVAFSVGVEPERETPLEIRQ 1049
             +     + L L+P+Q+HL + GA  +L +AL    G S ++       P   TPLE RQ
Sbjct: 535  KEQEGNRVCLHLRPSQRHLNSAGAQQKLAEALGILYGTSVELTIVEDDNPAMRTPLEWRQ 594

Query: 1050 RFHRELLEQAHQGLLQDENIQWLTQVMQAEMEPDSL 1085
              + E L QA + ++ D NIQ L +   A+++ +S+
Sbjct: 595  AIYEEKLAQAREAIIADNNIQTLRRFFDADLDEESI 630