Pairwise Alignments

Query, 1113 a.a., DNA polymerase III, subunits gamma and tau (RefSeq) from Shewanella loihica PV-4

Subject, 616 a.a., DNA polymerase III, gamma and tau subunits, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  264 bits (674), Expect = 2e-74
 Identities = 154/432 (35%), Positives = 228/432 (52%), Gaps = 20/432 (4%)

Query: 1   MSYQVLARKWRPATFEQVVGQSHVLHALTNALSQNRLHHAYLFTGTRGVGKTSLARLFAK 60
           MS+  L  ++RP TF +V GQ  V   L+ A  +NR+  AYLF+GTRGVGKT++AR+FAK
Sbjct: 1   MSHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAK 60

Query: 61  GLNCEQGVTATPCGQCASCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120
            LNC    T  PC  C  C ++ QG  VD++E+D AS   +DD + L + + Y P  GR+
Sbjct: 61  ALNCTTAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRY 120

Query: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTL 180
           KV++IDE HML+R +FNALLKTLEEPP  V F+LATT+P + PVT++SRC  F    L+ 
Sbjct: 121 KVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSE 180

Query: 181 DEICVQLGHILAQEQVGYDDGAVKLLAKAANGSMRDALSLTDQAIAFGAGQVRLTQVQTM 240
             +   L  +L +E V YD  AV+L+A+ A GS+RD++SL  Q +A G  ++ +   + +
Sbjct: 181 AGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGV 240

Query: 241 LGTIDEHHVIVLLKALCDGDVDLLMKVTGDVLSFGADPHEVLRSLLELLHQITLTQFAPS 300
           LG   +   + L++AL   D   +  V  ++L  G D    LR L+     + + + A  
Sbjct: 241 LGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGE 300

Query: 301 AAQLS-----QYAEQIKAFAKQLRPEQVQLYYQLLLNGRQDLPHAPDPKSGLEMALLRAI 355
           AA  S       A Q   +AK+  P  +   +Q+ L G++ +  + +P   LE+ LL  +
Sbjct: 301 AALASLDLPEDEARQWLGWAKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLN-L 359

Query: 356 AFVPEAPVQRWMGEAGSEILLPD--------------TPLPELGKGEDVAPTSARPDGTV 401
           A +P       +  +G     P                P P     +  AP +       
Sbjct: 360 AMLPRLMPVESLRPSGGGASAPSGSAAEGPASGGAATIPTPGTQGMQGTAPAAGMTPSPA 419

Query: 402 KPVKPAESVLNS 413
            P  PA S   S
Sbjct: 420 APATPAPSAAPS 431