Pairwise Alignments

Query, 1113 a.a., DNA polymerase III, subunits gamma and tau (RefSeq) from Shewanella loihica PV-4

Subject, 910 a.a., DNA polymerase III subunit gamma and tau from Bifidobacterium breve UCC2003

 Score =  213 bits (543), Expect = 4e-59
 Identities = 120/309 (38%), Positives = 178/309 (57%), Gaps = 5/309 (1%)

Query: 6   LARKWRPATFEQVVGQSHVLHALTNALSQNRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65
           L R++RP TFE V+GQ  V   L  AL + RL HAYLF+G RG GKTS AR+ A+ +NC 
Sbjct: 5   LYRRYRPDTFEGVIGQDQVTVPLMRALDEGRLTHAYLFSGPRGCGKTSSARILARCVNCA 64

Query: 66  QGVTATPCGQCASCVEIAQGR--FVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRFKVY 123
           +G T+ PCG+C SC ++A G    +D++E+DAAS   VDD REL +   + P R R+K++
Sbjct: 65  KGPTSHPCGECESCKDLATGGPGSIDVVEIDAASHNGVDDARELRERAGFAPARDRYKIF 124

Query: 124 LIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTLDEI 183
           ++DE HM+++  FNALLK +EEPPEHV F+ ATT+P ++  T+ SR   +  + +  + +
Sbjct: 125 ILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPFRLVPQEVM 184

Query: 184 CVQLGHILAQEQVGYDDGAVKLLAKAANGSMRDALSLTDQAIAFGA-GQVRLTQVQTMLG 242
              L  I  +E +  + G +KL  +A  GSMRD LS+ DQ +     G +       +LG
Sbjct: 185 GPYLETICEKESIKPEPGVLKLAMRAGGGSMRDTLSVLDQLMVGSVEGVITHDAAVALLG 244

Query: 243 TIDEHHVIVLLKALCDGDVDLLMKVTGDVLSFGADPHEVLRSLLELLHQITLTQFAPSAA 302
              E  +   + A+ D + + L  V   V+  G DP   +  LL  +  + +   A   A
Sbjct: 245 FTPEALIGEAIDAVIDHNGEALYGVIQKVVVGGFDPRRFVEDLLARVRDLLVLTLAGDRA 304

Query: 303 Q--LSQYAE 309
           +  LS  AE
Sbjct: 305 ESVLSDTAE 313



 Score = 28.1 bits (61), Expect = 0.003
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 713 AAKESASKKPLVGAKKPGANQA---QASSEQQAGEENKSGAEPYVPPKRPEQAALSVETA 769
           A++  +  +P   A  P AN      A +   AG   ++GA     P +    A +   A
Sbjct: 423 ASRNRSQSQPQTPANAPAANAGGWNAAGTLNPAGSAGQTGAAGQAAPAQQAMPAAAAPAA 482

Query: 770 PSGEATSQSFGETAQNAQD 788
           P+  AT+ +   +   + D
Sbjct: 483 PASPATNAAAPSSDSRSTD 501