Pairwise Alignments

Query, 500 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

Subject, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  196 bits (498), Expect = 2e-54
 Identities = 138/375 (36%), Positives = 201/375 (53%), Gaps = 12/375 (3%)

Query: 130 LVAKTEVTDLDQVLSSAQSVVIISLV--ALIFVILLSSYYISTFVGGALYTNVMALKRAA 187
           L A++ V  L   L +A  VV   L+  A + + L ++   +   GG  Y  +  L++ A
Sbjct: 147 LSARSRVA-LFAALGAAPCVVAGGLLGGAGVAIALATAAAAALGAGGLAYLALAPLQQLA 205

Query: 188 D-----GDL-TGRLNFFEVKDEFSILAVSIDTLVERQHQLVSRMTQASSQIRTVVQAFRQ 241
           +     GD   G+L +   +DE+  +A ++  L      +V R+  AS Q+         
Sbjct: 206 EQARQVGDNPVGQLIYAGRRDEYGQIAFAMKMLETEAGAMVGRIGDASRQLSQHAHELLG 265

Query: 242 TAQEGQTLAAEQRQHLDSLATAMEEMTAAVKEVARNAEQSSNETQEANQQVEAGSKDIAI 301
                   A+ Q+   D +ATA+ +M A+V+EVA NA++++     A+ +   G++ +  
Sbjct: 266 AMDSSTQSASRQQSETDQVATAINQMAASVQEVANNAQRTAEAASRADSETATGTEVVNR 325

Query: 302 TVQAIGDLANEIGDASTAVNTLNDNAAKIDEVVTTINAISEQTNLLALNAAIEAARAGEQ 361
           T  AIG LA +I  A   ++ L  ++  I +V+  I  I+EQTNLLALNAAIEAARAGEQ
Sbjct: 326 TGAAIGQLAQDIQQAGDVIHELEAHSNDITKVLDVIRGIAEQTNLLALNAAIEAARAGEQ 385

Query: 362 GRGFAVVADEVRTLAGRTQAATVEIKSMIEALQTGSHALTQVMKRTVEKAQDGKQHVLET 421
           GRGFAVVADEVR LA RTQ +T EI  MI ALQ G+    +VM+R+ E+A    +H  + 
Sbjct: 386 GRGFAVVADEVRNLASRTQQSTQEINGMIGALQGGARQAVEVMQRSREQAMQSVEHAAQA 445

Query: 422 GEDLKAIAHHSERVYEMSVLIATSAEEQSAVANEIATNLMEIRNQS-HDVEQS--ANQSV 478
              L  I      + EMS  IA + E+QSAV+  I  N++ IR  S H V     + QS 
Sbjct: 446 ARSLHGINSRVTEISEMSQQIAAAVEQQSAVSENINQNIVSIRGGSDHHVANGLRSRQSA 505

Query: 479 SGCDELHATAEQLDQ 493
           SG  EL  + E L Q
Sbjct: 506 SGVAELANSMEVLVQ 520



 Score = 29.6 bits (65), Expect = 3e-04
 Identities = 29/162 (17%), Positives = 63/162 (38%), Gaps = 18/162 (11%)

Query: 353 IEAARAGEQGR---GFAVVADEVRTLAGRTQAATVEIKSMIEALQTGSHALTQVMKRTVE 409
           I A R  E G+      ++  E   + GR   A+ ++      L     + TQ   R   
Sbjct: 220 IYAGRRDEYGQIAFAMKMLETEAGAMVGRIGDASRQLSQHAHELLGAMDSSTQSASRQQS 279

Query: 410 KAQDGKQHVLETGEDLKAIAHHSERVYEMSVLIATSAEEQSAVANEI-----------AT 458
           +       + +    ++ +A++++R  E     A+ A+ ++A   E+           A 
Sbjct: 280 ETDQVATAINQMAASVQEVANNAQRTAEA----ASRADSETATGTEVVNRTGAAIGQLAQ 335

Query: 459 NLMEIRNQSHDVEQSANQSVSGCDELHATAEQLDQLLVGLKV 500
           ++ +  +  H++E  +N      D +   AEQ + L +   +
Sbjct: 336 DIQQAGDVIHELEAHSNDITKVLDVIRGIAEQTNLLALNAAI 377