Pairwise Alignments

Query, 500 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

Subject, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  200 bits (508), Expect = 1e-55
 Identities = 147/466 (31%), Positives = 234/466 (50%), Gaps = 12/466 (2%)

Query: 42  GQFNSQIKQSHQQSALADAQKMVELIDLSLKYVPDDKAASF---KQELVSAGFADT--QS 96
           GQF   I      + LA+    V+L D    ++  +   +    K+E      ++   +S
Sbjct: 164 GQFLGSIFYDVSLAELAELVNEVKLFDAGYVFIVSEDGTTIAHPKKEFNGKPMSEFLGES 223

Query: 97  SLNAKTSRLVHAGGGTLMQGDSLTAHSRASSANLVAKTEVTDLDQVLSSAQSVVIISLVA 156
            +N  T +++  G    +    +          +  +     LD++  S     +I+LV 
Sbjct: 224 KINVDTHQVIINGKPYAVSFSDVEGEDWYVGVVIDEEIAYAALDELRRSTLIFTVIALVI 283

Query: 157 LIFVILLSSYYISTFVGGALYTNVMALKRAA--DGDLTGRLNFFEVKDEFSILAVSIDTL 214
            +FV+L    +I   +   L T   A++  A  +GDLT RL+     +EF+ LA+  +T 
Sbjct: 284 SVFVLL----FIVRVLMKPLDTLNDAIQNVASGEGDLTQRLST-NTDEEFAKLAIGFNTF 338

Query: 215 VERQHQLVSRMTQASSQIRTVVQAFRQTAQEGQTLAAEQRQHLDSLATAMEEMTAAVKEV 274
            E   + + +     ++I    ++   T Q+       Q   L+ LATAM EM     +V
Sbjct: 339 TETLQKQLIQSKAIGAEILRGSESTSMTLQQSAEAMRSQLHELEQLATAMHEMATTSSDV 398

Query: 275 ARNAEQSSNETQEANQQVEAGSKDIAITVQAIGDLANEIGDASTAVNTLNDNAAKIDEVV 334
           A NA+ +++  + A+    AG+  +  T +AI  L+  I  A   V  L    A I+ V+
Sbjct: 399 ANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLSATIDAAVDDVKVLESATANIETVL 458

Query: 335 TTINAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAGRTQAATVEIKSMIEALQ 394
             IN I++QTNLLALNAAIEAARAGE GRGFAVVADEVRTLA RTQ +T EI++MIE LQ
Sbjct: 459 KVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEKLQ 518

Query: 395 TGSHALTQVMKRTVEKAQDGKQHVLETGEDLKAIAHHSERVYEMSVLIATSAEEQSAVAN 454
           +G++A+   M  + + A           E L+ I    +++ +M++ IA++AEEQS VA 
Sbjct: 519 SGANAVAVAMSHSKDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIASAAEEQSLVAE 578

Query: 455 EIATNLMEIRNQSHDVEQSANQSVSGCDELHATAEQLDQLLVGLKV 500
           EI  N ++I++ S  V +SA+++            + D +L   KV
Sbjct: 579 EINNNTVKIKDLSDQVAESADEANMSMQIQTENIREQDAILNKFKV 624